(25 nodes) DNA packaging complex network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100180482	Structural maintenance of chromosomes protein. (1202 aa)
	zf(phd)-1	Uncharacterized protein. (667 aa)
	F7AHT0_CIOIN	Histone H3; Belongs to the histone H3 family. (136 aa)
	F7ADN1_CIOIN	Structural maintenance of chromosomes protein. (1253 aa)
	LOC100180692	Glyoxylate/succinic semialdehyde reductase 1 isoform X2. (473 aa)
	LOC100183843	Histone H2A; Belongs to the histone H2A family. (128 aa)
	F6UGC2_CIOIN	Cnd1 domain-containing protein. (1182 aa)
	F6QSH0_CIOIN	Uncharacterized protein. (709 aa)
	F6VEQ7_CIOIN	RFX-type winged-helix domain-containing protein. (624 aa)
	F6Y7R5_CIOIN	Amine oxidase. (802 aa)
	LOC100180348	B-cell CLL/lymphoma 7 protein family member B-like. (167 aa)
	F6PHR7_CIOIN	Uncharacterized protein. (228 aa)
	LOC100176733	Cnd3 domain-containing protein. (957 aa)
	F6WMT5_CIOIN	HSA domain-containing protein. (374 aa)
	F6W213_CIOIN	Uncharacterized protein. (572 aa)
	LOC100175631	Histone H2A; Belongs to the histone H2A family. (141 aa)
	F6UXY9_CIOIN	ARID domain-containing protein. (428 aa)
	F6PWP3_CIOIN	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1233 aa)
	tcfl1	Ci-TCFL1 protein. (333 aa)
	Zf(c2h2)-80	Uncharacterized protein. (698 aa)
	LOC100183508	MRG/MORF4L-binding protein-like. (148 aa)
	F6ZEU6_CIOIN	Uncharacterized protein. (601 aa)
	LOC100186757	Histone H3; Belongs to the histone H3 family. (136 aa)
	H2XRV0_CIOIN	Uncharacterized protein. (227 aa)
	H2XSB0_CIOIN	Uncharacterized protein. (578 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHR7_CIOIN	LOC100183508	ENSCINP00000018266	ENSCINP00000026941	Uncharacterized protein.	MRG/MORF4L-binding protein-like.	0.918
F6PHR7_CIOIN	LOC100183843	ENSCINP00000018266	ENSCINP00000011952	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.915
F6PHR7_CIOIN	tcfl1	ENSCINP00000018266	ENSCINP00000026106	Uncharacterized protein.	Ci-TCFL1 protein.	0.946
F6PWP3_CIOIN	F6QSH0_CIOIN	ENSCINP00000025038	ENSCINP00000013216	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Uncharacterized protein.	0.993
F6PWP3_CIOIN	F6UGC2_CIOIN	ENSCINP00000025038	ENSCINP00000012092	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Cnd1 domain-containing protein.	0.680
F6PWP3_CIOIN	F6ZEU6_CIOIN	ENSCINP00000025038	ENSCINP00000029687	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Uncharacterized protein.	0.719
F6PWP3_CIOIN	F7ADN1_CIOIN	ENSCINP00000025038	ENSCINP00000007558	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.995
F6PWP3_CIOIN	H2XSB0_CIOIN	ENSCINP00000025038	ENSCINP00000032544	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Uncharacterized protein.	0.765
F6PWP3_CIOIN	LOC100176733	ENSCINP00000025038	ENSCINP00000018699	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Cnd3 domain-containing protein.	0.988
F6PWP3_CIOIN	LOC100180482	ENSCINP00000025038	ENSCINP00000000293	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.995
F6QSH0_CIOIN	F6PWP3_CIOIN	ENSCINP00000013216	ENSCINP00000025038	Uncharacterized protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.993
F6QSH0_CIOIN	F6UGC2_CIOIN	ENSCINP00000013216	ENSCINP00000012092	Uncharacterized protein.	Cnd1 domain-containing protein.	0.767
F6QSH0_CIOIN	F6ZEU6_CIOIN	ENSCINP00000013216	ENSCINP00000029687	Uncharacterized protein.	Uncharacterized protein.	0.812
F6QSH0_CIOIN	F7ADN1_CIOIN	ENSCINP00000013216	ENSCINP00000007558	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.999
F6QSH0_CIOIN	H2XSB0_CIOIN	ENSCINP00000013216	ENSCINP00000032544	Uncharacterized protein.	Uncharacterized protein.	0.836
F6QSH0_CIOIN	LOC100176733	ENSCINP00000013216	ENSCINP00000018699	Uncharacterized protein.	Cnd3 domain-containing protein.	0.999
F6QSH0_CIOIN	LOC100180482	ENSCINP00000013216	ENSCINP00000000293	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.999
F6UGC2_CIOIN	F6PWP3_CIOIN	ENSCINP00000012092	ENSCINP00000025038	Cnd1 domain-containing protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.680
F6UGC2_CIOIN	F6QSH0_CIOIN	ENSCINP00000012092	ENSCINP00000013216	Cnd1 domain-containing protein.	Uncharacterized protein.	0.767
F6UGC2_CIOIN	F6ZEU6_CIOIN	ENSCINP00000012092	ENSCINP00000029687	Cnd1 domain-containing protein.	Uncharacterized protein.	0.991