(33 nodes) Mixed, incl. Calcium ion-regulated exocytosis of neurotransmitter, and Myosin V binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XU80_BRAFL	Uncharacterized protein. (363 aa)
	C3XZH6_BRAFL	Uncharacterized protein. (265 aa)
	C3Y1H1_BRAFL	C2 domain-containing protein. (138 aa)
	C3Y1H2_BRAFL	Uncharacterized protein. (1144 aa)
	C3Y1K5_BRAFL	Aa_trans domain-containing protein. (517 aa)
	C3Y1N3_BRAFL	Uncharacterized protein. (283 aa)
	C3Y3Z5_BRAFL	Uncharacterized protein. (146 aa)
	C3Y6U6_BRAFL	MHD2 domain-containing protein. (1621 aa)
	C3Y7R3_BRAFL	Uncharacterized protein; Belongs to the MAGUK family. (1216 aa)
	C3YAR7_BRAFL	Uncharacterized protein. (270 aa)
	C3YAR8_BRAFL	Uncharacterized protein. (305 aa)
	C3YCC3_BRAFL	Uncharacterized protein. (218 aa)
	C3YMM3_BRAFL	Methyltransf_25 domain-containing protein. (264 aa)
	C3YNU7_BRAFL	Uncharacterized protein. (343 aa)
	C3YPR3_BRAFL	RabBD domain-containing protein. (257 aa)
	C3YPZ4_BRAFL	C2 domain-containing protein. (262 aa)
	C3Z2N4_BRAFL	Uncharacterized protein. (94 aa)
	C3Z4L8_BRAFL	C2 domain-containing protein. (444 aa)
	C3Z6H6_BRAFL	Uncharacterized protein. (334 aa)
	C3Z6X5_BRAFL	Uncharacterized protein. (184 aa)
	C3Z9K2_BRAFL	Methyltransf_25 domain-containing protein. (527 aa)
	C3ZA62_BRAFL	Uncharacterized protein. (956 aa)
	C3ZAP3_BRAFL	ATP-grasp domain-containing protein. (393 aa)
	C3ZHD7_BRAFL	Methyltransf_25 domain-containing protein. (302 aa)
	C3ZK90_BRAFL	Uncharacterized protein. (274 aa)
	C3ZLP3_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (589 aa)
	C3ZLU0_BRAFL	SAM domain-containing protein. (969 aa)
	C3ZQN1_BRAFL	FYVE-type domain-containing protein. (561 aa)
	C3ZQN2_BRAFL	PDZ domain-containing protein. (118 aa)
	C3ZQN3_BRAFL	C2 domain-containing protein. (116 aa)
	C3ZW38_BRAFL	Uncharacterized protein. (225 aa)
	C3ZYV3_BRAFL	Fibronectin type-III domain-containing protein. (702 aa)
	C4A0W4_BRAFL	Uncharacterized protein. (99 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU80_BRAFL	C3XZH6_BRAFL	C3XU80	C3XZH6	Uncharacterized protein.	Uncharacterized protein.	0.563
C3XU80_BRAFL	C3Y1H1_BRAFL	C3XU80	C3Y1H1	Uncharacterized protein.	C2 domain-containing protein.	0.537
C3XU80_BRAFL	C3Y1H2_BRAFL	C3XU80	C3Y1H2	Uncharacterized protein.	Uncharacterized protein.	0.541
C3XU80_BRAFL	C3Y1K5_BRAFL	C3XU80	C3Y1K5	Uncharacterized protein.	Aa_trans domain-containing protein.	0.602
C3XU80_BRAFL	C3Y1N3_BRAFL	C3XU80	C3Y1N3	Uncharacterized protein.	Uncharacterized protein.	0.601
C3XU80_BRAFL	C3Y7R3_BRAFL	C3XU80	C3Y7R3	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.497
C3XU80_BRAFL	C3YAR7_BRAFL	C3XU80	C3YAR7	Uncharacterized protein.	Uncharacterized protein.	0.563
C3XU80_BRAFL	C3YAR8_BRAFL	C3XU80	C3YAR8	Uncharacterized protein.	Uncharacterized protein.	0.418
C3XU80_BRAFL	C3YCC3_BRAFL	C3XU80	C3YCC3	Uncharacterized protein.	Uncharacterized protein.	0.705
C3XU80_BRAFL	C3YMM3_BRAFL	C3XU80	C3YMM3	Uncharacterized protein.	Methyltransf_25 domain-containing protein.	0.563
C3XU80_BRAFL	C3YNU7_BRAFL	C3XU80	C3YNU7	Uncharacterized protein.	Uncharacterized protein.	0.457
C3XU80_BRAFL	C3YPR3_BRAFL	C3XU80	C3YPR3	Uncharacterized protein.	RabBD domain-containing protein.	0.460
C3XU80_BRAFL	C3YPZ4_BRAFL	C3XU80	C3YPZ4	Uncharacterized protein.	C2 domain-containing protein.	0.601
C3XU80_BRAFL	C3Z9K2_BRAFL	C3XU80	C3Z9K2	Uncharacterized protein.	Methyltransf_25 domain-containing protein.	0.418
C3XU80_BRAFL	C3ZAP3_BRAFL	C3XU80	C3ZAP3	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.626
C3XU80_BRAFL	C3ZHD7_BRAFL	C3XU80	C3ZHD7	Uncharacterized protein.	Methyltransf_25 domain-containing protein.	0.418
C3XU80_BRAFL	C3ZQN2_BRAFL	C3XU80	C3ZQN2	Uncharacterized protein.	PDZ domain-containing protein.	0.462
C3XU80_BRAFL	C3ZQN3_BRAFL	C3XU80	C3ZQN3	Uncharacterized protein.	C2 domain-containing protein.	0.461
C3XZH6_BRAFL	C3XU80_BRAFL	C3XZH6	C3XU80	Uncharacterized protein.	Uncharacterized protein.	0.563
C3XZH6_BRAFL	C3Y1H1_BRAFL	C3XZH6	C3Y1H1	Uncharacterized protein.	C2 domain-containing protein.	0.536