(34 nodes) Leukocyte cell-cell adhesion, and Sushi network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRC2_BRAFL	Uncharacterized protein. (447 aa)
	C3XSU6_BRAFL	Uncharacterized protein. (355 aa)
	C3Y2D6_BRAFL	Uncharacterized protein. (442 aa)
	C3Y6C5_BRAFL	Uncharacterized protein. (285 aa)
	C3Y723_BRAFL	Uncharacterized protein. (689 aa)
	C3Y7M8_BRAFL	Uncharacterized protein. (454 aa)
	C3Y8R9_BRAFL	Uncharacterized protein. (472 aa)
	C3Y9U4_BRAFL	Uncharacterized protein. (1317 aa)
	C3Y9U6_BRAFL	Uncharacterized protein. (478 aa)
	C3YC35_BRAFL	Uncharacterized protein. (391 aa)
	C3YLW1_BRAFL	Uncharacterized protein. (220 aa)
	C3YMA0_BRAFL	Uncharacterized protein. (223 aa)
	C3YRV6_BRAFL	Uncharacterized protein. (442 aa)
	C3YVU5_BRAFL	Uncharacterized protein. (583 aa)
	C3YZF8_BRAFL	Uncharacterized protein. (432 aa)
	C3YZG5_BRAFL	Uncharacterized protein. (452 aa)
	C3YZH6_BRAFL	Uncharacterized protein. (320 aa)
	C3YZH8_BRAFL	Uncharacterized protein. (400 aa)
	C3Z3P4_BRAFL	Uncharacterized protein. (328 aa)
	C3Z4D3_BRAFL	Uncharacterized protein. (582 aa)
	C3Z5K8_BRAFL	Uncharacterized protein. (272 aa)
	C3Z6T7_BRAFL	Uncharacterized protein. (1786 aa)
	C3Z6T9_BRAFL	Uncharacterized protein. (626 aa)
	C3ZBF9_BRAFL	Uncharacterized protein. (460 aa)
	C3ZC64_BRAFL	Uncharacterized protein. (450 aa)
	C3ZN52_BRAFL	Uncharacterized protein. (405 aa)
	C3ZN57_BRAFL	Uncharacterized protein. (452 aa)
	C3ZN59_BRAFL	Uncharacterized protein. (521 aa)
	C3ZNN0_BRAFL	Uncharacterized protein. (459 aa)
	C3ZNN7_BRAFL	Uncharacterized protein. (438 aa)
	C3ZQT1_BRAFL	Uncharacterized protein. (297 aa)
	C3ZS06_BRAFL	Uncharacterized protein. (284 aa)
	C3ZWV4_BRAFL	Uncharacterized protein. (190 aa)
	C3ZY60_BRAFL	Uncharacterized protein. (379 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRC2_BRAFL	C3Y6C5_BRAFL	C3XRC2	C3Y6C5	Uncharacterized protein.	Uncharacterized protein.	0.891
C3XRC2_BRAFL	C3Y9U6_BRAFL	C3XRC2	C3Y9U6	Uncharacterized protein.	Uncharacterized protein.	0.852
C3XRC2_BRAFL	C3Z3P4_BRAFL	C3XRC2	C3Z3P4	Uncharacterized protein.	Uncharacterized protein.	0.628
C3XRC2_BRAFL	C3Z4D3_BRAFL	C3XRC2	C3Z4D3	Uncharacterized protein.	Uncharacterized protein.	0.864
C3XRC2_BRAFL	C3Z5K8_BRAFL	C3XRC2	C3Z5K8	Uncharacterized protein.	Uncharacterized protein.	0.677
C3XRC2_BRAFL	C3Z6T9_BRAFL	C3XRC2	C3Z6T9	Uncharacterized protein.	Uncharacterized protein.	0.883
C3XRC2_BRAFL	C3ZQT1_BRAFL	C3XRC2	C3ZQT1	Uncharacterized protein.	Uncharacterized protein.	0.614
C3XRC2_BRAFL	C3ZS06_BRAFL	C3XRC2	C3ZS06	Uncharacterized protein.	Uncharacterized protein.	0.417
C3XRC2_BRAFL	C3ZWV4_BRAFL	C3XRC2	C3ZWV4	Uncharacterized protein.	Uncharacterized protein.	0.446
C3XSU6_BRAFL	C3Y6C5_BRAFL	C3XSU6	C3Y6C5	Uncharacterized protein.	Uncharacterized protein.	0.830
C3XSU6_BRAFL	C3Y9U6_BRAFL	C3XSU6	C3Y9U6	Uncharacterized protein.	Uncharacterized protein.	0.836
C3XSU6_BRAFL	C3YMA0_BRAFL	C3XSU6	C3YMA0	Uncharacterized protein.	Uncharacterized protein.	0.427
C3XSU6_BRAFL	C3Z3P4_BRAFL	C3XSU6	C3Z3P4	Uncharacterized protein.	Uncharacterized protein.	0.553
C3XSU6_BRAFL	C3Z4D3_BRAFL	C3XSU6	C3Z4D3	Uncharacterized protein.	Uncharacterized protein.	0.516
C3XSU6_BRAFL	C3Z5K8_BRAFL	C3XSU6	C3Z5K8	Uncharacterized protein.	Uncharacterized protein.	0.606
C3XSU6_BRAFL	C3Z6T7_BRAFL	C3XSU6	C3Z6T7	Uncharacterized protein.	Uncharacterized protein.	0.827
C3XSU6_BRAFL	C3Z6T9_BRAFL	C3XSU6	C3Z6T9	Uncharacterized protein.	Uncharacterized protein.	0.878
C3XSU6_BRAFL	C3ZS06_BRAFL	C3XSU6	C3ZS06	Uncharacterized protein.	Uncharacterized protein.	0.466
C3XSU6_BRAFL	C3ZWV4_BRAFL	C3XSU6	C3ZWV4	Uncharacterized protein.	Uncharacterized protein.	0.537
C3Y2D6_BRAFL	C3Y6C5_BRAFL	C3Y2D6	C3Y6C5	Uncharacterized protein.	Uncharacterized protein.	0.886