(15 nodes) Spectrin binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y0G3_BRAFL	ANK_REP_REGION domain-containing protein. (150 aa)
	C3YET8_BRAFL	ANK_REP_REGION domain-containing protein. (123 aa)
	C3YIN3_BRAFL	ANK_REP_REGION domain-containing protein. (165 aa)
	C3YKK9_BRAFL	CKK domain-containing protein. (123 aa)
	C3YUE4_BRAFL	Uncharacterized protein. (564 aa)
	C3YVA8_BRAFL	Uncharacterized protein. (477 aa)
	C3Z216_BRAFL	Uncharacterized protein. (487 aa)
	C3Z217_BRAFL	PDZ domain-containing protein. (254 aa)
	C3Z7N6_BRAFL	Uncharacterized protein. (223 aa)
	C3ZBY6_BRAFL	Uncharacterized protein. (229 aa)
	C3ZHP4_BRAFL	Uncharacterized protein. (454 aa)
	C3ZJV5_BRAFL	Uncharacterized protein. (473 aa)
	C3ZRF8_BRAFL	ANK_REP_REGION domain-containing protein. (501 aa)
	C3ZSH7_BRAFL	Calponin-homology (CH) domain-containing protein. (1021 aa)
	C4A101_BRAFL	Uncharacterized protein. (476 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YET8_BRAFL	C3ZJV5_BRAFL	C3YET8	C3ZJV5	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.422
C3YET8_BRAFL	C4A101_BRAFL	C3YET8	C4A101	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.439
C3Z216_BRAFL	C3Z217_BRAFL	C3Z216	C3Z217	Uncharacterized protein.	PDZ domain-containing protein.	0.540
C3Z217_BRAFL	C3Z216_BRAFL	C3Z217	C3Z216	PDZ domain-containing protein.	Uncharacterized protein.	0.540
C3ZJV5_BRAFL	C3YET8_BRAFL	C3ZJV5	C3YET8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.422
C4A101_BRAFL	C3YET8_BRAFL	C4A101	C3YET8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.439