(21 nodes) Regulation of glucose import network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y212_BRAFL	Deacetylase sirtuin-type domain-containing protein. (414 aa)
	C3Y2H9_BRAFL	Amino acid transporter. (522 aa)
	C3Y2J4_BRAFL	Uncharacterized protein. (123 aa)
	C3Y5V2_BRAFL	Uncharacterized protein. (240 aa)
	C3Y7U5_BRAFL	Uncharacterized protein. (236 aa)
	C3Y7U6_BRAFL	Uncharacterized protein. (303 aa)
	C3Y7U7_BRAFL	Uncharacterized protein. (435 aa)
	C3Y9C0_BRAFL	UBX domain-containing protein. (515 aa)
	C3YB16_BRAFL	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (176 aa)
	C3YB22_BRAFL	calpain_III domain-containing protein. (265 aa)
	C3YCM2_BRAFL	Uncharacterized protein. (539 aa)
	C3YPS8_BRAFL	Uncharacterized protein. (712 aa)
	C3Z2B6_BRAFL	DED domain-containing protein. (141 aa)
	C3ZEB9_BRAFL	PID domain-containing protein. (70 aa)
	C3ZLT2_BRAFL	Fibrinogen C-terminal domain-containing protein. (176 aa)
	C3ZLT3_BRAFL	Uncharacterized protein. (447 aa)
	C3ZLT7_BRAFL	Uncharacterized protein. (371 aa)
	C3ZLT8_BRAFL	Uncharacterized protein. (302 aa)
	C3ZLW6_BRAFL	Uncharacterized protein. (303 aa)
	C3ZLW7_BRAFL	Uncharacterized protein. (437 aa)
	C3ZLX9_BRAFL	Uncharacterized protein. (245 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y5V2_BRAFL	C3ZLT2_BRAFL	C3Y5V2	C3ZLT2	Uncharacterized protein.	Fibrinogen C-terminal domain-containing protein.	0.537
C3Y7U5_BRAFL	C3ZLT2_BRAFL	C3Y7U5	C3ZLT2	Uncharacterized protein.	Fibrinogen C-terminal domain-containing protein.	0.537
C3YPS8_BRAFL	C3Z2B6_BRAFL	C3YPS8	C3Z2B6	Uncharacterized protein.	DED domain-containing protein.	0.681
C3Z2B6_BRAFL	C3YPS8_BRAFL	C3Z2B6	C3YPS8	DED domain-containing protein.	Uncharacterized protein.	0.681
C3ZLT2_BRAFL	C3Y5V2_BRAFL	C3ZLT2	C3Y5V2	Fibrinogen C-terminal domain-containing protein.	Uncharacterized protein.	0.537
C3ZLT2_BRAFL	C3Y7U5_BRAFL	C3ZLT2	C3Y7U5	Fibrinogen C-terminal domain-containing protein.	Uncharacterized protein.	0.537
C3ZLT2_BRAFL	C3ZLX9_BRAFL	C3ZLT2	C3ZLX9	Fibrinogen C-terminal domain-containing protein.	Uncharacterized protein.	0.537
C3ZLX9_BRAFL	C3ZLT2_BRAFL	C3ZLX9	C3ZLT2	Uncharacterized protein.	Fibrinogen C-terminal domain-containing protein.	0.537