47 items (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCMIP00000047847	Uncharacterized protein. (135 aa)
	Ubc	Ubiquitin-like domain-containing protein. (97 aa)
	gtf2h5	General transcription factor IIH subunit 5. (71 aa)
	V9KN14_CALMI	Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
	gtf2h3	Uncharacterized protein. (320 aa)
	ube2v2	UBIQUITIN_CONJUGAT_2 domain-containing protein. (160 aa)
	parp1	Poly [ADP-ribose] polymerase. (1035 aa)
	ube2i	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
	ccnh	CYCLIN domain-containing protein; Belongs to the cyclin family. (340 aa)
	LOC103183812	Small ubiquitin-related modifier. (107 aa)
	LOC103178064	UV excision repair protein RAD23-like protein B isoform 5. (378 aa)
	xpa	DNA repair protein complementing XP-A cells-like protein. (226 aa)
	ercc3	Uncharacterized protein. (783 aa)
	ENSCMIP00000011378	Uncharacterized protein. (505 aa)
	ercc4	ERCC4 domain-containing protein. (939 aa)
	vwa5b2	Uncharacterized protein. (987 aa)
	gtf2h1	Uncharacterized protein. (592 aa)
	rpa3	Uncharacterized protein. (121 aa)
	gtf2h2	General transcription factor IIH subunit. (398 aa)
	ENSCMIP00000002845	Uncharacterized protein. (147 aa)
	parp3	Poly [ADP-ribose] polymerase. (525 aa)
	LOC103174237	HELICc2 domain-containing protein. (108 aa)
	sumo2	Small ubiquitin-related modifier. (113 aa)
	ENSCMIP00000001014	UBIQUITIN_CONJUGAT_2 domain-containing protein. (133 aa)
	LOC103186049	Small ubiquitin-related modifier. (124 aa)
	rps27a	Ubiquitin-like domain-containing protein. (159 aa)
	rnf111	RING-type domain-containing protein. (973 aa)
	sumo1	Small ubiquitin-related modifier. (111 aa)
	rbx1	RING-type domain-containing protein. (107 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
	cul4a	CULLIN_2 domain-containing protein; Belongs to the cullin family. (923 aa)
	cul4b	CULLIN_2 domain-containing protein; Belongs to the cullin family. (755 aa)
	usp45	Ubiquitin carboxyl-terminal hydrolase. (831 aa)
	LOC103173339	Uncharacterized protein. (344 aa)
	LOC103177579	Uncharacterized protein. (1175 aa)
	cetn3	Uncharacterized protein. (196 aa)
	meiob	Uncharacterized protein. (472 aa)
	wdr76	WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (342 aa)
	LOC103183517	Uncharacterized protein. (391 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (601 aa)
	chd1l	Uncharacterized protein. (951 aa)
	kxd1	KxDL domain-containing protein. (189 aa)
	uba52	Ribosomal protein L40-like isoform 1. (128 aa)
	Kctd2	Uncharacterized protein. (63 aa)
	ddb1	CPSF_A domain-containing protein. (1144 aa)
	ube2n	Ubiquitin-conjugating enzyme E2N; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	xpc	Uncharacterized protein. (956 aa)

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001014	ENSCMIP00000011378	ENSCMIP00000001014	ENSCMIP00000011378	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.492
ENSCMIP00000001014	ENSCMIP00000047847	ENSCMIP00000001014	ENSCMIP00000047847	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.505
ENSCMIP00000001014	Kctd2	ENSCMIP00000001014	ENSCMIP00000049169	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.531
ENSCMIP00000001014	LOC103173339	ENSCMIP00000001014	ENSCMIP00000009937	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.590
ENSCMIP00000001014	LOC103174237	ENSCMIP00000001014	ENSCMIP00000001786	UBIQUITIN_CONJUGAT_2 domain-containing protein.	HELICc2 domain-containing protein.	0.669
ENSCMIP00000001014	LOC103177579	ENSCMIP00000001014	ENSCMIP00000011340	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.492
ENSCMIP00000001014	LOC103178064	ENSCMIP00000001014	ENSCMIP00000015989	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UV excision repair protein RAD23-like protein B isoform 5.	0.590
ENSCMIP00000001014	LOC103183517	ENSCMIP00000001014	ENSCMIP00000044223	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.590
ENSCMIP00000001014	LOC103183812	ENSCMIP00000001014	ENSCMIP00000018808	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Small ubiquitin-related modifier.	0.748
ENSCMIP00000001014	LOC103186049	ENSCMIP00000001014	ENSCMIP00000018701	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Small ubiquitin-related modifier.	0.718
ENSCMIP00000001014	Ubc	ENSCMIP00000001014	ENSCMIP00000028897	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.964
ENSCMIP00000001014	V9KN14_CALMI	ENSCMIP00000001014	ENSCMIP00000031874	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 2.	0.909
ENSCMIP00000001014	chd1l	ENSCMIP00000001014	ENSCMIP00000047194	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.505
ENSCMIP00000001014	cul4a	ENSCMIP00000001014	ENSCMIP00000026208	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.504
ENSCMIP00000001014	cul4b	ENSCMIP00000001014	ENSCMIP00000034788	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.504
ENSCMIP00000001014	ddb1	ENSCMIP00000001014	ENSCMIP00000026284	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CPSF_A domain-containing protein.	0.610
ENSCMIP00000001014	gtf2h2	ENSCMIP00000001014	ENSCMIP00000017953	UBIQUITIN_CONJUGAT_2 domain-containing protein.	General transcription factor IIH subunit.	0.540
ENSCMIP00000001014	gtf2h5	ENSCMIP00000001014	ENSCMIP00000029167	UBIQUITIN_CONJUGAT_2 domain-containing protein.	General transcription factor IIH subunit 5.	0.541
ENSCMIP00000001014	parp1	ENSCMIP00000001014	ENSCMIP00000013962	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Poly [ADP-ribose] polymerase.	0.556
ENSCMIP00000001014	parp3	ENSCMIP00000001014	ENSCMIP00000002216	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Poly [ADP-ribose] polymerase.	0.487