STRINGSTRING
cul1b cul1b prickle1b prickle1b cul1a cul1a hbaa1 hbaa1 myca myca wnt4 wnt4 prickle1a prickle1a acta1b acta1b cul3a cul3a smurf2 smurf2 dvl2 dvl2 prickle2a prickle2a pkdc pkdc prickle2b prickle2b cul3b cul3b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cul1bCullin 1b; Belongs to the cullin family. (775 aa)
prickle1bPrickle homolog 1b. (863 aa)
cul1aCullin 1a; Belongs to the cullin family. (777 aa)
hbaa1Hemoglobin subunit alpha; Involved in oxygen transport from gills to the various peripheral tissues. (143 aa)
mycaTranscriptional regulator Myc-A; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (409 aa)
wnt4Protein Wnt-4a; Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Plays an important role in embryonic development. (352 aa)
prickle1aPrickle homolog 1a. (793 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
cul3aCullin 3a; Belongs to the cullin family. (774 aa)
smurf2E3 ubiquitin-protein ligase SMURF2; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. (765 aa)
dvl2Dishevelled segment polarity protein 2. (747 aa)
prickle2aPrickle homolog 2a. (869 aa)
pkdcProtein kinase-like domain-containing. (322 aa)
prickle2bPrickle homolog 2b. (840 aa)
cul3bCullin 3b; Belongs to the cullin family. (766 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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