10 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	LSM7-2	U6 snRNA-associated Sm-like protein LSm7. (111 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (107 aa)
	LSM5-2	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (57 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	A0A060XE54	Uncharacterized protein. (321 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (139 aa)
	LSM1-3	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	A0A060YY38	Sm domain-containing protein. (94 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060XE54	A0A060YY38	A0A060XE54	A0A060YY38	Uncharacterized protein.	Sm domain-containing protein.	0.999
A0A060XE54	LSM1	A0A060XE54	A0A060W463	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.991
A0A060XE54	LSM1-2	A0A060XE54	A0A060XTF9	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.991
A0A060XE54	LSM1-3	A0A060XE54	A0A060XYE8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.991
A0A060XE54	LSM5	A0A060XE54	A0A060WJD6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.998
A0A060XE54	LSM5-2	A0A060XE54	A0A060Z7Y2	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.998
A0A060XE54	LSM7	A0A060XE54	C1BH51	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm7.	0.996
A0A060XE54	LSM7-2	A0A060XE54	C1BI44	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm7.	0.996
A0A060YY38	A0A060XE54	A0A060YY38	A0A060XE54	Sm domain-containing protein.	Uncharacterized protein.	0.999
A0A060YY38	LSM1	A0A060YY38	A0A060W463	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.994
A0A060YY38	LSM1-2	A0A060YY38	A0A060XTF9	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.994
A0A060YY38	LSM1-3	A0A060YY38	A0A060XYE8	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.994
A0A060YY38	LSM3	A0A060YY38	A0A060YMJ7	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A060YY38	LSM5	A0A060YY38	A0A060WJD6	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.998
A0A060YY38	LSM5-2	A0A060YY38	A0A060Z7Y2	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.998
A0A060YY38	LSM7	A0A060YY38	C1BH51	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A060YY38	LSM7-2	A0A060YY38	C1BI44	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.999
LSM1	A0A060XE54	A0A060W463	A0A060XE54	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein.	0.991
LSM1	A0A060YY38	A0A060W463	A0A060YY38	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Sm domain-containing protein.	0.994
LSM1	LSM1-2	A0A060W463	A0A060XTF9	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.911