(20 nodes) Semaphorin receptor activity network (Fundulus heteroclitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105940119	Neuropilin; Belongs to the neuropilin family. (939 aa)
	plxna4	Plexin A4. (1915 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (924 aa)
	ENSFHEP00000032081	Plexin_cytopl domain-containing protein. (256 aa)
	LOC105934232	Plexin A1a. (1892 aa)
	LOC105934241	Plexin b1a. (2214 aa)
	ENSFHEP00000030972	Sema domain-containing protein. (417 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1372 aa)
	LOC105935251	Plexin A2. (1900 aa)
	PLXND1	Plexin-D1. (1899 aa)
	LOC105933677	Macrophage stimulating 1 receptor a. (1409 aa)
	mst1r	Macrophage-stimulating protein receptor. (1375 aa)
	ENSFHEP00000016574	Plexin_cytopl domain-containing protein. (377 aa)
	LOC105933706	Plexin b1b. (2235 aa)
	ENSFHEP00000015009	Plexin_cytopl domain-containing protein. (156 aa)
	PLXNA2	Plexin A2. (1914 aa)
	LOC105922372	Plexin B3. (1692 aa)
	LOC105937131	Sema domain-containing protein. (1848 aa)
	plxna1	Sema domain-containing protein. (1889 aa)
	LOC105927402	Plexin b2b. (1844 aa)

Your Current Organism:

Fundulus heteroclitus

NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSFHEP00000015009	ENSFHEP00000016574	ENSFHEP00000015009	ENSFHEP00000016574	Plexin_cytopl domain-containing protein.	Plexin_cytopl domain-containing protein.	0.900
ENSFHEP00000015009	ENSFHEP00000030972	ENSFHEP00000015009	ENSFHEP00000030972	Plexin_cytopl domain-containing protein.	Sema domain-containing protein.	0.900
ENSFHEP00000015009	LOC105933677	ENSFHEP00000015009	ENSFHEP00000018639	Plexin_cytopl domain-containing protein.	Macrophage stimulating 1 receptor a.	0.488
ENSFHEP00000015009	met	ENSFHEP00000015009	ENSFHEP00000026901	Plexin_cytopl domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.488
ENSFHEP00000015009	mst1r	ENSFHEP00000015009	ENSFHEP00000017969	Plexin_cytopl domain-containing protein.	Macrophage-stimulating protein receptor.	0.488
ENSFHEP00000015009	nrp1	ENSFHEP00000015009	ENSFHEP00000032633	Plexin_cytopl domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.759
ENSFHEP00000016574	ENSFHEP00000015009	ENSFHEP00000016574	ENSFHEP00000015009	Plexin_cytopl domain-containing protein.	Plexin_cytopl domain-containing protein.	0.900
ENSFHEP00000016574	ENSFHEP00000030972	ENSFHEP00000016574	ENSFHEP00000030972	Plexin_cytopl domain-containing protein.	Sema domain-containing protein.	0.769
ENSFHEP00000016574	ENSFHEP00000032081	ENSFHEP00000016574	ENSFHEP00000032081	Plexin_cytopl domain-containing protein.	Plexin_cytopl domain-containing protein.	0.900
ENSFHEP00000016574	LOC105933677	ENSFHEP00000016574	ENSFHEP00000018639	Plexin_cytopl domain-containing protein.	Macrophage stimulating 1 receptor a.	0.488
ENSFHEP00000016574	met	ENSFHEP00000016574	ENSFHEP00000026901	Plexin_cytopl domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.488
ENSFHEP00000016574	mst1r	ENSFHEP00000016574	ENSFHEP00000017969	Plexin_cytopl domain-containing protein.	Macrophage-stimulating protein receptor.	0.488
ENSFHEP00000016574	nrp1	ENSFHEP00000016574	ENSFHEP00000032633	Plexin_cytopl domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.759
ENSFHEP00000030972	ENSFHEP00000015009	ENSFHEP00000030972	ENSFHEP00000015009	Sema domain-containing protein.	Plexin_cytopl domain-containing protein.	0.900
ENSFHEP00000030972	ENSFHEP00000016574	ENSFHEP00000030972	ENSFHEP00000016574	Sema domain-containing protein.	Plexin_cytopl domain-containing protein.	0.769
ENSFHEP00000030972	ENSFHEP00000032081	ENSFHEP00000030972	ENSFHEP00000032081	Sema domain-containing protein.	Plexin_cytopl domain-containing protein.	0.900
ENSFHEP00000030972	LOC105933677	ENSFHEP00000030972	ENSFHEP00000018639	Sema domain-containing protein.	Macrophage stimulating 1 receptor a.	0.488
ENSFHEP00000030972	met	ENSFHEP00000030972	ENSFHEP00000026901	Sema domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.488
ENSFHEP00000030972	mst1r	ENSFHEP00000030972	ENSFHEP00000017969	Sema domain-containing protein.	Macrophage-stimulating protein receptor.	0.488
ENSFHEP00000030972	nrp1	ENSFHEP00000030972	ENSFHEP00000032633	Sema domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.759