(18 nodes) Mixed, incl. Fragile X messenger ribonucleoprotein 1, and Sodium/calcium exchanger protein network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	slc8a1	Solute carrier family 8 member 1b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (949 aa)
	LOC103480164	Fragile X mental retardation, autosomal homolog 2. (656 aa)
	fmr1	Fragile X mental retardation 1. (273 aa)
	ENSPREP00000006954	Uncharacterized protein. (233 aa)
	LOC103471836	Solute carrier family 8 member 1a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (948 aa)
	ENSPREP00000007260	annotation not available (291 aa)
	ENSPREP00000008060	Uncharacterized protein. (280 aa)
	ENSPREP00000010761	Uncharacterized protein. (227 aa)
	Zbtb14	BTB domain-containing protein. (107 aa)
	ENSPREP00000016876	annotation not available (248 aa)
	en2	Homeobox protein engrailed-like. (267 aa)
	ENSPREP00000019008	Uncharacterized protein. (279 aa)
	LOC103461054	Uncharacterized protein. (466 aa)
	LOC103461055	Fragile X mental retardation 1. (400 aa)
	ENSPREP00000023420	Methyl-accepting transducer domain-containing protein. (381 aa)
	fkbp2	Peptidylprolyl isomerase. (84 aa)
	atp11b	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1078 aa)
	fxr1	Fragile X mental retardation, autosomal homolog 1. (571 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103461054	LOC103461055	ENSPREP00000020903	ENSPREP00000020915	Uncharacterized protein.	Fragile X mental retardation 1.	0.687
LOC103461054	fmr1	ENSPREP00000020903	ENSPREP00000004643	Uncharacterized protein.	Fragile X mental retardation 1.	0.687
LOC103461054	slc8a1	ENSPREP00000020903	ENSPREP00000002311	Uncharacterized protein.	Solute carrier family 8 member 1b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.681
LOC103461055	LOC103461054	ENSPREP00000020915	ENSPREP00000020903	Fragile X mental retardation 1.	Uncharacterized protein.	0.687
LOC103461055	LOC103480164	ENSPREP00000020915	ENSPREP00000002846	Fragile X mental retardation 1.	Fragile X mental retardation, autosomal homolog 2.	0.954
LOC103461055	Zbtb14	ENSPREP00000020915	ENSPREP00000015290	Fragile X mental retardation 1.	BTB domain-containing protein.	0.488
LOC103461055	en2	ENSPREP00000020915	ENSPREP00000017180	Fragile X mental retardation 1.	Homeobox protein engrailed-like.	0.597
LOC103461055	fmr1	ENSPREP00000020915	ENSPREP00000004643	Fragile X mental retardation 1.	Fragile X mental retardation 1.	0.932
LOC103461055	fxr1	ENSPREP00000020915	ENSPREP00000033555	Fragile X mental retardation 1.	Fragile X mental retardation, autosomal homolog 1.	0.566
LOC103461055	slc8a1	ENSPREP00000020915	ENSPREP00000002311	Fragile X mental retardation 1.	Solute carrier family 8 member 1b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.681
LOC103480164	LOC103461055	ENSPREP00000002846	ENSPREP00000020915	Fragile X mental retardation, autosomal homolog 2.	Fragile X mental retardation 1.	0.954
LOC103480164	fmr1	ENSPREP00000002846	ENSPREP00000004643	Fragile X mental retardation, autosomal homolog 2.	Fragile X mental retardation 1.	0.555
Zbtb14	LOC103461055	ENSPREP00000015290	ENSPREP00000020915	BTB domain-containing protein.	Fragile X mental retardation 1.	0.488
Zbtb14	fmr1	ENSPREP00000015290	ENSPREP00000004643	BTB domain-containing protein.	Fragile X mental retardation 1.	0.488
Zbtb14	slc8a1	ENSPREP00000015290	ENSPREP00000002311	BTB domain-containing protein.	Solute carrier family 8 member 1b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.580
atp11b	fkbp2	ENSPREP00000033514	ENSPREP00000031929	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Peptidylprolyl isomerase.	0.827
atp11b	fxr1	ENSPREP00000033514	ENSPREP00000033555	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Fragile X mental retardation, autosomal homolog 1.	0.630
en2	LOC103461055	ENSPREP00000017180	ENSPREP00000020915	Homeobox protein engrailed-like.	Fragile X mental retardation 1.	0.597
en2	fmr1	ENSPREP00000017180	ENSPREP00000004643	Homeobox protein engrailed-like.	Fragile X mental retardation 1.	0.597
fkbp2	atp11b	ENSPREP00000031929	ENSPREP00000033514	Peptidylprolyl isomerase.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.827