STRINGSTRING
spg11 spg11 pikfyve pikfyve rab20 rab20 RAB7A RAB7A LOC103466506 LOC103466506 cln3 cln3 LOC103462425 LOC103462425 LOC103465062 LOC103465062 tmem175 tmem175
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
spg11SPG11 vesicle trafficking associated, spatacsin. (2269 aa)
pikfyvePhosphoinositide kinase, FYVE finger containing. (2073 aa)
rab20RAB20, member RAS oncogene family. (263 aa)
RAB7ARAB7A, member RAS oncogene family. (207 aa)
LOC103466506Synaptotagmin VIIa. (606 aa)
cln3Battenin. (480 aa)
LOC103462425Synaptotagmin VIIb. (468 aa)
LOC103465062RAB7a, member RAS oncogene family. (207 aa)
tmem175Transmembrane protein 175. (521 aa)
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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