(47 nodes) K Homology domain, type 1 superfamily network (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fxr1	Fragile X mental retardation, autosomal homolog 1. (571 aa)
	pno1	Partner of NOB1 homolog. (252 aa)
	LOC103477144	Zgc:110045. (428 aa)
	LOC103472224	Insulin-like growth factor 2 mRNA binding protein 3. (608 aa)
	LOC103471319	Bicaudal C homolog 2. (916 aa)
	ascc1	Activating signal cointegrator 1 complex subunit 1. (347 aa)
	LOC103480164	Fragile X mental retardation, autosomal homolog 2. (656 aa)
	LOC103473466	Heterogeneous nuclear ribonucleoprotein K, like. (431 aa)
	PNPT1	Polyribonucleotide nucleotidyltransferase 1. (728 aa)
	LOC103460562	Uncharacterized protein. (522 aa)
	sf1	Splicing factor 1. (676 aa)
	tdrkh	Tudor and KH domain containing. (587 aa)
	LOC103471124	Ankyrin repeat and KH domain containing 1. (2678 aa)
	LOC103467637	Poly(rC) binding protein 2. (324 aa)
	LOC103468198	Insulin-like growth factor 2 mRNA binding protein 1. (601 aa)
	khdc4	Uncharacterized protein. (630 aa)
	PCBP2	Poly(rC) binding protein 2. (469 aa)
	khsrp	KH-type splicing regulatory protein. (648 aa)
	QKI	QKI, KH domain containing, RNA binding 2. (354 aa)
	LOC103480378	KH and NYN domain containing. (1015 aa)
	igf2bp2	Insulin-like growth factor 2 mRNA binding protein 2a. (613 aa)
	bicc1	BicC family RNA binding protein 1a. (913 aa)
	exosc3	Exosome component 3. (273 aa)
	LOC103476188	Neuro-oncological ventral antigen 1. (507 aa)
	LOC103480471	High density lipoprotein binding protein b. (1278 aa)
	krr1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (381 aa)
	LOC103461055	Fragile X mental retardation 1. (400 aa)
	exosc2	Exosome component 2. (293 aa)
	hdlbp	High density lipoprotein binding protein a. (1176 aa)
	akap1	A kinase (PRKA) anchor protein 1b. (821 aa)
	FUBP3	Far upstream element binding protein 3. (572 aa)
	KHDRBS3	KH RNA binding domain containing, signal transduction associated 3. (345 aa)
	LOC103473752	Uncharacterized protein. (306 aa)
	LOC103472039	KH domain containing, RNA binding, signal transduction associated 1b. (362 aa)
	mex3a	RING-type domain-containing protein. (527 aa)
	LOC103467510	Uncharacterized protein. (420 aa)
	MEX3D	Mex-3 RNA binding family member D. (483 aa)
	fubp1	Far upstream element (FUSE) binding protein 1. (656 aa)
	LOC103470199	RING-type domain-containing protein. (681 aa)
	LOC103475148	Uncharacterized protein. (517 aa)
	n4bp1	Nedd4 binding protein 1. (818 aa)
	hnrnpk	Heterogeneous nuclear ribonucleoprotein K. (436 aa)
	LOC103458862	QKI, KH domain containing, RNA binding a. (389 aa)
	pcbp3	Uncharacterized protein. (313 aa)
	ENSPREP00000031736	Poly(rC) binding protein 4. (284 aa)
	khdrbs1	KH domain containing, RNA binding, signal transduction associated 1a. (371 aa)
	Khdrbs2	KH domain containing, RNA binding, signal transduction associated 2. (344 aa)

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000031736	LOC103473466	ENSPREP00000031736	ENSPREP00000004020	Poly(rC) binding protein 4.	Heterogeneous nuclear ribonucleoprotein K, like.	0.517
ENSPREP00000031736	hnrnpk	ENSPREP00000031736	ENSPREP00000028098	Poly(rC) binding protein 4.	Heterogeneous nuclear ribonucleoprotein K.	0.517
FUBP3	LOC103458862	ENSPREP00000022392	ENSPREP00000028599	Far upstream element binding protein 3.	QKI, KH domain containing, RNA binding a.	0.445
FUBP3	QKI	ENSPREP00000022392	ENSPREP00000013455	Far upstream element binding protein 3.	QKI, KH domain containing, RNA binding 2.	0.445
FUBP3	exosc2	ENSPREP00000022392	ENSPREP00000021167	Far upstream element binding protein 3.	Exosome component 2.	0.462
FUBP3	exosc3	ENSPREP00000022392	ENSPREP00000016974	Far upstream element binding protein 3.	Exosome component 3.	0.444
FUBP3	khdc4	ENSPREP00000022392	ENSPREP00000010316	Far upstream element binding protein 3.	Uncharacterized protein.	0.414
KHDRBS3	LOC103473466	ENSPREP00000023265	ENSPREP00000004020	KH RNA binding domain containing, signal transduction associated 3.	Heterogeneous nuclear ribonucleoprotein K, like.	0.423
KHDRBS3	hnrnpk	ENSPREP00000023265	ENSPREP00000028098	KH RNA binding domain containing, signal transduction associated 3.	Heterogeneous nuclear ribonucleoprotein K.	0.423
Khdrbs2	LOC103473466	ENSPREP00000033241	ENSPREP00000004020	KH domain containing, RNA binding, signal transduction associated 2.	Heterogeneous nuclear ribonucleoprotein K, like.	0.423
Khdrbs2	hnrnpk	ENSPREP00000033241	ENSPREP00000028098	KH domain containing, RNA binding, signal transduction associated 2.	Heterogeneous nuclear ribonucleoprotein K.	0.423
LOC103458862	FUBP3	ENSPREP00000028599	ENSPREP00000022392	QKI, KH domain containing, RNA binding a.	Far upstream element binding protein 3.	0.445
LOC103458862	LOC103460562	ENSPREP00000028599	ENSPREP00000004489	QKI, KH domain containing, RNA binding a.	Uncharacterized protein.	0.445
LOC103458862	LOC103473466	ENSPREP00000028599	ENSPREP00000004020	QKI, KH domain containing, RNA binding a.	Heterogeneous nuclear ribonucleoprotein K, like.	0.537
LOC103458862	fubp1	ENSPREP00000028599	ENSPREP00000026516	QKI, KH domain containing, RNA binding a.	Far upstream element (FUSE) binding protein 1.	0.416
LOC103458862	hnrnpk	ENSPREP00000028599	ENSPREP00000028098	QKI, KH domain containing, RNA binding a.	Heterogeneous nuclear ribonucleoprotein K.	0.537
LOC103458862	khsrp	ENSPREP00000028599	ENSPREP00000000559	QKI, KH domain containing, RNA binding a.	KH-type splicing regulatory protein.	0.416
LOC103460562	LOC103458862	ENSPREP00000004489	ENSPREP00000028599	Uncharacterized protein.	QKI, KH domain containing, RNA binding a.	0.445
LOC103460562	QKI	ENSPREP00000004489	ENSPREP00000013455	Uncharacterized protein.	QKI, KH domain containing, RNA binding 2.	0.445
LOC103460562	exosc2	ENSPREP00000004489	ENSPREP00000021167	Uncharacterized protein.	Exosome component 2.	0.462