(38 nodes) GAIN domain superfamily network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010053732	Si:ch211-241f5.3; Belongs to the G-protein coupled receptor 2 family. (786 aa)
	Adgrb2	Adhesion G protein-coupled receptor B2; Belongs to the G-protein coupled receptor 2 family. (1614 aa)
	LOC108872479	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (767 aa)
	ENSLCAP00010035801	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (411 aa)
	ENSLCAP00010035807	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (586 aa)
	adgra3	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1354 aa)
	adgrb3	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1532 aa)
	ENSLCAP00010039306	Adhesion G protein-coupled receptor G6; Belongs to the G-protein coupled receptor 2 family. (1239 aa)
	adgrb1	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1599 aa)
	ENSLCAP00010043561	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (396 aa)
	ENSLCAP00010060355	Uncharacterized protein. (1813 aa)
	ENSLCAP00010060220	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family. (1536 aa)
	Adgrv1	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6184 aa)
	Celsr3	Cadherin, EGF LAG seven-pass G-type receptor 3; Belongs to the G-protein coupled receptor 2 family. (3205 aa)
	adgra2	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1385 aa)
	Adgrd2	Adhesion G protein-coupled receptor D2. (718 aa)
	ENSLCAP00010057508	Uncharacterized protein. (1934 aa)
	LOC108897701	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (638 aa)
	LOC108897750	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (533 aa)
	LOC108897711	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (639 aa)
	LOC108902715	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1527 aa)
	ENSLCAP00010053832	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (554 aa)
	adgrd1	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (878 aa)
	ADGRA1	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family. (812 aa)
	ENSLCAP00010013437	Adhesion G protein-coupled receptor F3b; Belongs to the G-protein coupled receptor 2 family. (804 aa)
	ENSLCAP00010013453	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (528 aa)
	LOC108893542	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1283 aa)
	LOC108883395	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1518 aa)
	ENSLCAP00010020694	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (864 aa)
	Adgrg7	GPS domain-containing protein. (650 aa)
	ENSLCAP00010024421	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (397 aa)
	ENSLCAP00010024634	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1707 aa)
	Adgrl4	Adhesion G protein-coupled receptor L4; Belongs to the G-protein coupled receptor 2 family. (736 aa)
	ENSLCAP00010028880	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (350 aa)
	ENSLCAP00010028940	Adhesion G protein-coupled receptor B1b; Belongs to the G-protein coupled receptor 2 family. (1514 aa)
	adgrl2	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1503 aa)
	Celsr1	Cadherin EGF LAG seven-pass G-type receptor 1a; Belongs to the G-protein coupled receptor 2 family. (3047 aa)
	ADGRL3	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family. (1516 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRA1	ADGRL3	ENSLCAP00010000987	ENSLCAP00010034304	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	0.608
ADGRA1	ENSLCAP00010024634	ENSLCAP00010000987	ENSLCAP00010024634	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.607
ADGRA1	ENSLCAP00010060220	ENSLCAP00010000987	ENSLCAP00010060220	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family.	0.608
ADGRA1	LOC108883395	ENSLCAP00010000987	ENSLCAP00010019247	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.615
ADGRA1	LOC108897750	ENSLCAP00010000987	ENSLCAP00010056375	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.457
ADGRA1	LOC108902715	ENSLCAP00010000987	ENSLCAP00010053917	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.615
ADGRA1	adgrl2	ENSLCAP00010000987	ENSLCAP00010031073	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.615
ADGRL3	ADGRA1	ENSLCAP00010034304	ENSLCAP00010000987	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	0.608
ADGRL3	adgra2	ENSLCAP00010034304	ENSLCAP00010059220	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.608
ADGRL3	adgra3	ENSLCAP00010034304	ENSLCAP00010036254	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.608
ENSLCAP00010024634	ADGRA1	ENSLCAP00010024634	ENSLCAP00010000987	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	0.607
ENSLCAP00010024634	adgra2	ENSLCAP00010024634	ENSLCAP00010059220	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.607
ENSLCAP00010024634	adgra3	ENSLCAP00010024634	ENSLCAP00010036254	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.607
ENSLCAP00010057508	ENSLCAP00010060355	ENSLCAP00010057508	ENSLCAP00010060355	Uncharacterized protein.	Uncharacterized protein.	0.873
ENSLCAP00010060220	ADGRA1	ENSLCAP00010060220	ENSLCAP00010000987	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	0.608
ENSLCAP00010060220	adgra2	ENSLCAP00010060220	ENSLCAP00010059220	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.608
ENSLCAP00010060220	adgra3	ENSLCAP00010060220	ENSLCAP00010036254	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.608
ENSLCAP00010060355	ENSLCAP00010057508	ENSLCAP00010060355	ENSLCAP00010057508	Uncharacterized protein.	Uncharacterized protein.	0.873
LOC108883395	ADGRA1	ENSLCAP00010019247	ENSLCAP00010000987	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Adhesion G protein-coupled receptor A1; Belongs to the G-protein coupled receptor 2 family.	0.615
LOC108883395	adgra2	ENSLCAP00010019247	ENSLCAP00010059220	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.615