(30 nodes) Virion assembly network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vta1	MGC84207 protein. (303 aa)
	vps4a	MGC84050 protein; Belongs to the AAA ATPase family. (436 aa)
	A0A1L8GE79	Uncharacterized protein. (394 aa)
	A0A1L8GDA1	Rab-GAP TBC domain-containing protein. (849 aa)
	A0A1L8GCZ4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1177 aa)
	MGC78817	MGC78817 protein. (302 aa)
	Tbc1d20.2.L	Rab-GAP TBC domain-containing protein. (388 aa)
	A0A1L8FXP4	Uncharacterized protein; Belongs to the AAA ATPase family. (443 aa)
	pc.1	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1177 aa)
	tbc1d20.1	Rab-GAP TBC domain-containing protein. (387 aa)
	A0A1L8EM33	Uncharacterized protein. (200 aa)
	chmp6	Uncharacterized protein. (200 aa)
	lrsam1	Uncharacterized protein. (726 aa)
	A0A1L8F1T9	Uncharacterized protein. (368 aa)
	lrsam1-2	Uncharacterized protein. (726 aa)
	A0A1L8F6J3	Uncharacterized protein. (458 aa)
	Mvb12a.L	Uncharacterized protein. (353 aa)
	Chmp5.S	Uncharacterized protein. (219 aa)
	chmp5	Uncharacterized protein. (219 aa)
	rab1a	Rab1-prov protein. (204 aa)
	vps4b	Vps4b-prov protein; Belongs to the AAA ATPase family. (442 aa)
	tbc1d20.1-2	MGC52691 protein. (412 aa)
	sntb2	Uncharacterized protein; Belongs to the AAA ATPase family. (436 aa)
	A0A1L8GI41	Uncharacterized protein. (351 aa)
	Usp6nl.S	Rab-GAP TBC domain-containing protein. (871 aa)
	Usp6nl.L	Rab-GAP TBC domain-containing protein. (820 aa)
	chmp3	Uncharacterized protein. (220 aa)
	A0A1L8HSY7	Uncharacterized protein. (194 aa)
	A0A310TNL7	Rab-GAP TBC domain-containing protein. (847 aa)
	pdcd6ip	LOC398095 protein. (872 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EM33	A0A1L8F1T9	A0A1L8EM33	A0A1L8F1T9	Uncharacterized protein.	Uncharacterized protein.	0.764
A0A1L8EM33	A0A1L8F6J3	A0A1L8EM33	A0A1L8F6J3	Uncharacterized protein.	Uncharacterized protein.	0.764
A0A1L8EM33	A0A1L8FXP4	A0A1L8EM33	A0A1L8FXP4	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.914
A0A1L8EM33	A0A1L8GE79	A0A1L8EM33	A0A1L8GE79	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A1L8EM33	A0A1L8GI41	A0A1L8EM33	A0A1L8GI41	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A1L8EM33	A0A1L8HSY7	A0A1L8EM33	A0A1L8HSY7	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A1L8EM33	Chmp5.S	A0A1L8EM33	A0A1L8FRZ2	Uncharacterized protein.	Uncharacterized protein.	0.820
A0A1L8EM33	MGC78817	A0A1L8EM33	Q6IP85	Uncharacterized protein.	MGC78817 protein.	0.761
A0A1L8EM33	Mvb12a.L	A0A1L8EM33	A0A1L8F8S3	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A1L8EM33	chmp3	A0A1L8EM33	A0A1L8HKM4	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A1L8EM33	chmp5	A0A1L8EM33	A0A1L8FXB1	Uncharacterized protein.	Uncharacterized protein.	0.820
A0A1L8EM33	pdcd6ip	A0A1L8EM33	B7ZQZ0	Uncharacterized protein.	LOC398095 protein.	0.663
A0A1L8EM33	sntb2	A0A1L8EM33	A0A1L8GF31	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.914
A0A1L8EM33	vps4a	A0A1L8EM33	Q66IY7	Uncharacterized protein.	MGC84050 protein; Belongs to the AAA ATPase family.	0.914
A0A1L8EM33	vps4b	A0A1L8EM33	Q8AVB9	Uncharacterized protein.	Vps4b-prov protein; Belongs to the AAA ATPase family.	0.914
A0A1L8EM33	vta1	A0A1L8EM33	Q66IX6	Uncharacterized protein.	MGC84207 protein.	0.761
A0A1L8F1T9	A0A1L8EM33	A0A1L8F1T9	A0A1L8EM33	Uncharacterized protein.	Uncharacterized protein.	0.764
A0A1L8F1T9	A0A1L8GE79	A0A1L8F1T9	A0A1L8GE79	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A1L8F1T9	A0A1L8GI41	A0A1L8F1T9	A0A1L8GI41	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A1L8F1T9	A0A1L8HSY7	A0A1L8F1T9	A0A1L8HSY7	Uncharacterized protein.	Uncharacterized protein.	0.773