35 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fermt2-2	Plekhc1-prov protein. (687 aa)
	rnf222	RING-type domain-containing protein. (210 aa)
	Tgfb1i1.S	Uncharacterized protein; Belongs to the paxillin family. (561 aa)
	Rnf222.S	RING-type domain-containing protein. (255 aa)
	Tgfb1i1.L	Uncharacterized protein; Belongs to the paxillin family. (501 aa)
	fermt2	PH domain-containing protein. (687 aa)
	A0A1L8F3F3	WH1 domain-containing protein. (319 aa)
	Vasp.L	WH1 domain-containing protein. (386 aa)
	fblim1	Uncharacterized protein. (388 aa)
	fblim1-2	Uncharacterized protein. (386 aa)
	A0A1L8FQV5	Uncharacterized protein. (277 aa)
	A0A1L8FVM7	Uncharacterized protein. (349 aa)
	A0A1L8G3P7	LIM zinc-binding domain-containing protein. (59 aa)
	A0A1L8G3V3	LIM zinc-binding domain-containing protein. (82 aa)
	A0A1L8G3V9	Uncharacterized protein. (46 aa)
	fermt1	PH domain-containing protein. (675 aa)
	lpp	Uncharacterized protein. (628 aa)
	A0A1L8GDR9	Uncharacterized protein. (372 aa)
	tesk2	Protein kinase domain-containing protein. (605 aa)
	A0A1L8GIH6	Uncharacterized protein. (372 aa)
	tesk2-2	Protein kinase domain-containing protein. (663 aa)
	Parvg.S	Uncharacterized protein. (314 aa)
	A0A1L8GW33	Uncharacterized protein. (305 aa)
	A0A1L8GW39	Uncharacterized protein. (312 aa)
	Lims1.L	LIM domain-containing protein. (397 aa)
	A0A1L8HBK8	Protein kinase domain-containing protein. (116 aa)
	A0A1L8HBL4	ANK_REP_REGION domain-containing protein. (263 aa)
	Lims1.S	LIM domain-containing protein. (340 aa)
	A0A1L8HJM7	Uncharacterized protein. (492 aa)
	pxn	Uncharacterized protein; Belongs to the paxillin family. (542 aa)
	A0A1L8I3C2	Protein kinase domain-containing protein. (852 aa)
	A0A310TR54	Protein kinase domain-containing protein. (857 aa)
	parvb	MGC115486 protein. (365 aa)
	fermt1-2	MGC53981 protein. (675 aa)
	pxn-2	LOC397826 protein; Belongs to the paxillin family. (539 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F3F3	A0A1L8G3P7	A0A1L8F3F3	A0A1L8G3P7	WH1 domain-containing protein.	LIM zinc-binding domain-containing protein.	0.565
A0A1L8F3F3	A0A1L8G3V3	A0A1L8F3F3	A0A1L8G3V3	WH1 domain-containing protein.	LIM zinc-binding domain-containing protein.	0.565
A0A1L8F3F3	A0A1L8G3V9	A0A1L8F3F3	A0A1L8G3V9	WH1 domain-containing protein.	Uncharacterized protein.	0.565
A0A1L8F3F3	fblim1	A0A1L8F3F3	A0A1L8FHL8	WH1 domain-containing protein.	Uncharacterized protein.	0.773
A0A1L8F3F3	fblim1-2	A0A1L8F3F3	A0A1L8FPB2	WH1 domain-containing protein.	Uncharacterized protein.	0.773
A0A1L8F3F3	lpp	A0A1L8F3F3	A0A1L8GA84	WH1 domain-containing protein.	Uncharacterized protein.	0.565
A0A1L8FQV5	A0A1L8GDR9	A0A1L8FQV5	A0A1L8GDR9	Uncharacterized protein.	Uncharacterized protein.	0.654
A0A1L8FQV5	A0A1L8GIH6	A0A1L8FQV5	A0A1L8GIH6	Uncharacterized protein.	Uncharacterized protein.	0.654
A0A1L8FQV5	A0A1L8GW33	A0A1L8FQV5	A0A1L8GW33	Uncharacterized protein.	Uncharacterized protein.	0.754
A0A1L8FQV5	A0A1L8GW39	A0A1L8FQV5	A0A1L8GW39	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A1L8FQV5	A0A1L8HBK8	A0A1L8FQV5	A0A1L8HBK8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.841
A0A1L8FQV5	A0A1L8HBL4	A0A1L8FQV5	A0A1L8HBL4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.841
A0A1L8FQV5	A0A1L8HJM7	A0A1L8FQV5	A0A1L8HJM7	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A1L8FQV5	Lims1.L	A0A1L8FQV5	A0A1L8H8L3	Uncharacterized protein.	LIM domain-containing protein.	0.980
A0A1L8FQV5	Lims1.S	A0A1L8FQV5	A0A1L8HGL0	Uncharacterized protein.	LIM domain-containing protein.	0.980
A0A1L8FQV5	Parvg.S	A0A1L8FQV5	A0A1L8GQC5	Uncharacterized protein.	Uncharacterized protein.	0.754
A0A1L8FQV5	parvb	A0A1L8FQV5	Q4QQZ5	Uncharacterized protein.	MGC115486 protein.	0.654
A0A1L8FVM7	A0A1L8GDR9	A0A1L8FVM7	A0A1L8GDR9	Uncharacterized protein.	Uncharacterized protein.	0.654
A0A1L8FVM7	A0A1L8GIH6	A0A1L8FVM7	A0A1L8GIH6	Uncharacterized protein.	Uncharacterized protein.	0.654
A0A1L8FVM7	A0A1L8GW33	A0A1L8FVM7	A0A1L8GW33	Uncharacterized protein.	Uncharacterized protein.	0.754