12 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Atp1a1.S	Cation_ATPase_N domain-containing protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. (1106 aa)
	arhgef7	Uncharacterized protein. (818 aa)
	arhgef7-2	Uncharacterized protein. (802 aa)
	atp1a1	Sodium/potassium-transporting ATPase subunit alpha. (1025 aa)
	src	Tyrosine-protein kinase. (532 aa)
	egfr	Receptor protein-tyrosine kinase. (1208 aa)
	egfr-2	Receptor protein-tyrosine kinase. (1210 aa)
	pik3cb	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1070 aa)
	pik3cb-2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1070 aa)
	Tm7	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	pik3cg	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1115 aa)
	Tpm1.L	Uncharacterized protein; Belongs to the tropomyosin family. (326 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
arhgef7	egfr	A0A1L8H914	A0A1L8FRS8	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.586
arhgef7	egfr-2	A0A1L8H914	A0A1L8FWP8	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.586
arhgef7	src	A0A1L8H914	Q2TAR1	Uncharacterized protein.	Tyrosine-protein kinase.	0.666
arhgef7-2	egfr	A0A1L8HH17	A0A1L8FRS8	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.586
arhgef7-2	egfr-2	A0A1L8HH17	A0A1L8FWP8	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.586
arhgef7-2	src	A0A1L8HH17	Q2TAR1	Uncharacterized protein.	Tyrosine-protein kinase.	0.666
egfr	arhgef7	A0A1L8FRS8	A0A1L8H914	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.586
egfr	arhgef7-2	A0A1L8FRS8	A0A1L8HH17	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.586
egfr	egfr-2	A0A1L8FRS8	A0A1L8FWP8	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.934
egfr	pik3cb	A0A1L8FRS8	A0A1L8G4U9	Receptor protein-tyrosine kinase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.846
egfr	pik3cb-2	A0A1L8FRS8	A0A1L8GB27	Receptor protein-tyrosine kinase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.846
egfr	pik3cg	A0A1L8FRS8	A0A1L8GTX9	Receptor protein-tyrosine kinase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.486
egfr	src	A0A1L8FRS8	Q2TAR1	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase.	0.978
egfr-2	arhgef7	A0A1L8FWP8	A0A1L8H914	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.586
egfr-2	arhgef7-2	A0A1L8FWP8	A0A1L8HH17	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.586
egfr-2	egfr	A0A1L8FWP8	A0A1L8FRS8	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.934
egfr-2	pik3cb	A0A1L8FWP8	A0A1L8G4U9	Receptor protein-tyrosine kinase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.846
egfr-2	pik3cb-2	A0A1L8FWP8	A0A1L8GB27	Receptor protein-tyrosine kinase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.846
egfr-2	pik3cg	A0A1L8FWP8	A0A1L8GTX9	Receptor protein-tyrosine kinase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.486
egfr-2	src	A0A1L8FWP8	Q2TAR1	Receptor protein-tyrosine kinase.	Tyrosine-protein kinase.	0.978