11 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	calm1	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	wasf1	WH2 domain-containing protein. (561 aa)
	wasf1-2	WH2 domain-containing protein. (553 aa)
	calml4	Uncharacterized protein. (153 aa)
	Tm7	Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)
	Tpm1.L	Uncharacterized protein; Belongs to the tropomyosin family. (326 aa)
	calml4-2	Uncharacterized protein. (152 aa)
	pxn	Uncharacterized protein; Belongs to the paxillin family. (542 aa)
	A0A1L8I385	Uncharacterized protein. (2303 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	pxn-2	LOC397826 protein; Belongs to the paxillin family. (539 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8I385	Tm7	A0A1L8I385	A0A1L8GTE7	Uncharacterized protein.	Uncharacterized protein; Belongs to the tropomyosin family.	0.551
A0A1L8I385	actl6a	A0A1L8I385	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.969
A0A1L8I385	calm1	A0A1L8I385	A0A1L8G5X8	Uncharacterized protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.567
A0A1L8I385	pxn	A0A1L8I385	A0A1L8I058	Uncharacterized protein.	Uncharacterized protein; Belongs to the paxillin family.	0.997
A0A1L8I385	pxn-2	A0A1L8I385	Q9I957	Uncharacterized protein.	LOC397826 protein; Belongs to the paxillin family.	0.997
Tm7	A0A1L8I385	A0A1L8GTE7	A0A1L8I385	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein.	0.551
Tm7	actl6a	A0A1L8GTE7	Q7ZYI5	Uncharacterized protein; Belongs to the tropomyosin family.	Baf53a-pending-prov protein; Belongs to the actin family.	0.995
Tm7	calm1	A0A1L8GTE7	A0A1L8G5X8	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein; Belongs to the calmodulin family.	0.600
Tm7	calml4	A0A1L8GTE7	A0A1L8GSE0	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein.	0.555
Tm7	calml4-2	A0A1L8GTE7	A0A1L8H184	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein.	0.555
Tm7	pxn	A0A1L8GTE7	A0A1L8I058	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein; Belongs to the paxillin family.	0.539
Tm7	pxn-2	A0A1L8GTE7	Q9I957	Uncharacterized protein; Belongs to the tropomyosin family.	LOC397826 protein; Belongs to the paxillin family.	0.543
Tpm1.L	actl6a	A0A1L8GZZ2	Q7ZYI5	Uncharacterized protein; Belongs to the tropomyosin family.	Baf53a-pending-prov protein; Belongs to the actin family.	0.784
Tpm1.L	calm1	A0A1L8GZZ2	A0A1L8G5X8	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein; Belongs to the calmodulin family.	0.499
Tpm1.L	calml4	A0A1L8GZZ2	A0A1L8GSE0	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein.	0.458
Tpm1.L	calml4-2	A0A1L8GZZ2	A0A1L8H184	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein.	0.458
Tpm1.L	pxn	A0A1L8GZZ2	A0A1L8I058	Uncharacterized protein; Belongs to the tropomyosin family.	Uncharacterized protein; Belongs to the paxillin family.	0.434
Tpm1.L	pxn-2	A0A1L8GZZ2	Q9I957	Uncharacterized protein; Belongs to the tropomyosin family.	LOC397826 protein; Belongs to the paxillin family.	0.434
actl6a	A0A1L8I385	Q7ZYI5	A0A1L8I385	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.969
actl6a	Tm7	Q7ZYI5	A0A1L8GTE7	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the tropomyosin family.	0.995