9 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pxn-2	LOC397826 protein; Belongs to the paxillin family. (539 aa)
	ccdc61	Uncharacterized protein. (498 aa)
	nedd1	WD_REPEATS_REGION domain-containing protein. (654 aa)
	Nedd1.L	WD_REPEATS_REGION domain-containing protein. (671 aa)
	Il1b.L	Interleukin-1. (145 aa)
	cep135	Uncharacterized protein. (1173 aa)
	pxn	Uncharacterized protein; Belongs to the paxillin family. (542 aa)
	il1b-A	Interleukin-1; Belongs to the IL-1 family. (283 aa)
	Nek2	Nek2A. (442 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Il1b.L	il1b-A	A0A1L8H1M6	B7ZSG9	Interleukin-1.	Interleukin-1; Belongs to the IL-1 family.	0.901
Nedd1.L	Nek2	A0A1L8GY92	Q9W622	WD_REPEATS_REGION domain-containing protein.	Nek2A.	0.472
Nedd1.L	cep135	A0A1L8GY92	A0A1L8HU26	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.672
Nek2	Nedd1.L	Q9W622	A0A1L8GY92	Nek2A.	WD_REPEATS_REGION domain-containing protein.	0.472
Nek2	cep135	Q9W622	A0A1L8HU26	Nek2A.	Uncharacterized protein.	0.565
Nek2	nedd1	Q9W622	A0A1L8GUQ0	Nek2A.	WD_REPEATS_REGION domain-containing protein.	0.472
cep135	Nedd1.L	A0A1L8HU26	A0A1L8GY92	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.672
cep135	Nek2	A0A1L8HU26	Q9W622	Uncharacterized protein.	Nek2A.	0.565
cep135	nedd1	A0A1L8HU26	A0A1L8GUQ0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.672
il1b-A	Il1b.L	B7ZSG9	A0A1L8H1M6	Interleukin-1; Belongs to the IL-1 family.	Interleukin-1.	0.901
nedd1	Nek2	A0A1L8GUQ0	Q9W622	WD_REPEATS_REGION domain-containing protein.	Nek2A.	0.472
nedd1	cep135	A0A1L8GUQ0	A0A1L8HU26	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.672
pxn	pxn-2	A0A1L8I058	Q9I957	Uncharacterized protein; Belongs to the paxillin family.	LOC397826 protein; Belongs to the paxillin family.	0.900
pxn-2	pxn	Q9I957	A0A1L8I058	LOC397826 protein; Belongs to the paxillin family.	Uncharacterized protein; Belongs to the paxillin family.	0.900