(59 nodes) Homeodomain network (Crocodylus porosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GBX1	Gastrulation brain homeobox 1. (222 aa)
	IRX6	Iroquois homeobox 6. (466 aa)
	ENSCPRP00005004663	annotation not available (135 aa)
	TSHZ3	Teashirt zinc finger homeobox 3. (1088 aa)
	TSHZ2	Teashirt zinc finger homeobox 2. (1036 aa)
	TSHZ1	Teashirt zinc finger homeobox 1. (1083 aa)
	PBX1	PBX homeobox 1. (430 aa)
	GBX2	Gastrulation brain homeobox 2. (316 aa)
	HOXC13	Homeobox C13. (300 aa)
	HOXC12	Homeobox C12. (267 aa)
	HOXC10	Homeobox C10. (411 aa)
	HOXC8	Homeobox C8. (242 aa)
	HOXB1	Homeobox B1. (316 aa)
	HOXB3	Homeobox B3. (399 aa)
	HOXB4	Homeobox B4. (244 aa)
	HOXB5	Homeobox B5. (264 aa)
	HOXB6	Homeobox B6. (223 aa)
	HOXB7	Homeobox B7. (217 aa)
	HOXB8	Homeobox B8. (242 aa)
	HOXB9	Homeobox B9. (247 aa)
	HOXB13	Homeobox B13. (296 aa)
	SHOX	Short stature homeobox. (278 aa)
	DLX3	Distal-less homeobox 3. (287 aa)
	MKX	Mohawk homeobox. (347 aa)
	HMX2	H6 family homeobox 2. (229 aa)
	GSX2	GS homeobox 2. (261 aa)
	PBX3	PBX homeobox 3. (433 aa)
	TGIF1	TGFB induced factor homeobox 1. (264 aa)
	MEIS1	Meis homeobox 1. (524 aa)
	TGIF2	TGFB induced factor homeobox 2. (264 aa)
	LBX1	Ladybird homeobox 1. (270 aa)
	PBX4	PBX homeobox 4. (439 aa)
	HOXD3	Homeobox D3. (333 aa)
	HOXD4	Homeobox D4. (237 aa)
	HOXD8	Homeobox protein Hox-D8-like. (106 aa)
	HOXD9	Homeobox D9. (291 aa)
	HOXD10	Homeobox D10. (339 aa)
	HOXD13	Homeobox D13. (339 aa)
	DLX2	Distal-less homeobox 2. (404 aa)
	IRX1	Iroquois homeobox 1. (406 aa)
	IRX2	Iroquois homeobox 2. (309 aa)
	IRX4	Iroquois homeobox 4. (471 aa)
	DLX6	Distal-less homeobox 6. (271 aa)
	DLX5	Distal-less homeobox 5. (285 aa)
	FOXN1	Forkhead box N1. (650 aa)
	HOXA1	Homeobox A1. (334 aa)
	HOXA2	Homeobox A2. (373 aa)
	HOXA3	Homeobox protein Hox-A3. (411 aa)
	ENSCPRP00005023149	annotation not available (109 aa)
	HOXA5	Homeobox A5. (270 aa)
	HOXA6	Homeobox A6. (231 aa)
	HOXA7	Homeobox A7. (219 aa)
	HOXA9	Homeobox A9. (261 aa)
	HOXA10	Homeobox A10. (271 aa)
	ENSCPRP00005023167	annotation not available (92 aa)
	HOXA11	Homeobox A11. (296 aa)
	HOXA13	Homeobox A13. (305 aa)
	PKNOX1	PBX/knotted 1 homeobox 1. (449 aa)
	MEIS2	Meis homeobox 2. (442 aa)

Your Current Organism:

Crocodylus porosus

NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLX2	ENSCPRP00005004663	ENSCPRP00005020133	ENSCPRP00005004663	Distal-less homeobox 2.	annotation not available	0.550
DLX2	IRX1	ENSCPRP00005020133	ENSCPRP00005020238	Distal-less homeobox 2.	Iroquois homeobox 1.	0.592
DLX2	IRX2	ENSCPRP00005020133	ENSCPRP00005020256	Distal-less homeobox 2.	Iroquois homeobox 2.	0.550
DLX2	IRX4	ENSCPRP00005020133	ENSCPRP00005020279	Distal-less homeobox 2.	Iroquois homeobox 4.	0.434
DLX2	IRX6	ENSCPRP00005020133	ENSCPRP00005004658	Distal-less homeobox 2.	Iroquois homeobox 6.	0.542
DLX2	MEIS2	ENSCPRP00005020133	ENSCPRP00005027221	Distal-less homeobox 2.	Meis homeobox 2.	0.503
DLX2	MKX	ENSCPRP00005020133	ENSCPRP00005011578	Distal-less homeobox 2.	Mohawk homeobox.	0.425
DLX2	PBX1	ENSCPRP00005020133	ENSCPRP00005007242	Distal-less homeobox 2.	PBX homeobox 1.	0.465
DLX2	PBX3	ENSCPRP00005020133	ENSCPRP00005015535	Distal-less homeobox 2.	PBX homeobox 3.	0.475
DLX2	PBX4	ENSCPRP00005020133	ENSCPRP00005019126	Distal-less homeobox 2.	PBX homeobox 4.	0.430
DLX3	FOXN1	ENSCPRP00005011021	ENSCPRP00005022684	Distal-less homeobox 3.	Forkhead box N1.	0.482
DLX3	MEIS2	ENSCPRP00005011021	ENSCPRP00005027221	Distal-less homeobox 3.	Meis homeobox 2.	0.769
DLX3	PBX1	ENSCPRP00005011021	ENSCPRP00005007242	Distal-less homeobox 3.	PBX homeobox 1.	0.428
DLX3	PBX3	ENSCPRP00005011021	ENSCPRP00005015535	Distal-less homeobox 3.	PBX homeobox 3.	0.428
DLX3	PBX4	ENSCPRP00005011021	ENSCPRP00005019126	Distal-less homeobox 3.	PBX homeobox 4.	0.428
DLX5	DLX6	ENSCPRP00005020699	ENSCPRP00005020692	Distal-less homeobox 5.	Distal-less homeobox 6.	0.809
DLX5	PBX1	ENSCPRP00005020699	ENSCPRP00005007242	Distal-less homeobox 5.	PBX homeobox 1.	0.428
DLX5	PBX3	ENSCPRP00005020699	ENSCPRP00005015535	Distal-less homeobox 5.	PBX homeobox 3.	0.428
DLX5	PBX4	ENSCPRP00005020699	ENSCPRP00005019126	Distal-less homeobox 5.	PBX homeobox 4.	0.428
DLX6	DLX5	ENSCPRP00005020692	ENSCPRP00005020699	Distal-less homeobox 6.	Distal-less homeobox 5.	0.809