(12 nodes) Proteasome accessory complex network (Pyrenophora teres)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTT_00527	AAA domain-containing protein; Belongs to the AAA ATPase family. (393 aa)
	PTT_07229	AAA domain-containing protein; Belongs to the AAA ATPase family. (439 aa)
	PTT_07356	MPN domain-containing protein. (361 aa)
	PTT_07452	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (882 aa)
	PTT_08703	AAA domain-containing protein; Belongs to the AAA ATPase family. (460 aa)
	PTT_10297	PCI domain-containing protein. (485 aa)
	PTT_11976	Ubiquitin carboxyl-terminal hydrolase. (585 aa)
	PTT_14044	VWFA domain-containing protein. (292 aa)
	PTT_14525	MPN domain-containing protein. (333 aa)
	PTT_14578	AAA domain-containing protein; Belongs to the AAA ATPase family. (389 aa)
	PTT_17472	PCI domain-containing protein. (383 aa)
	PTT_17801	AAA domain-containing protein; Belongs to the AAA ATPase family. (466 aa)

Your Current Organism:

Pyrenophora teres

NCBI taxonomy Id: 861557
Other names: P. teres f. teres 0-1, Pyrenophora teres f. teres 0-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTT_00527	PTT_07229	E3RCJ7	E3RH64	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
PTT_00527	PTT_07356	E3RCJ7	E3RHG9	AAA domain-containing protein; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.999
PTT_00527	PTT_07452	E3RCJ7	E3RHN3	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
PTT_00527	PTT_08703	E3RCJ7	E3RKE6	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
PTT_00527	PTT_10297	E3RCJ7	E3RNX6	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999
PTT_00527	PTT_11976	E3RCJ7	E3RSR3	AAA domain-containing protein; Belongs to the AAA ATPase family.	Ubiquitin carboxyl-terminal hydrolase.	0.999
PTT_00527	PTT_14044	E3RCJ7	E3RXD8	AAA domain-containing protein; Belongs to the AAA ATPase family.	VWFA domain-containing protein.	0.999
PTT_00527	PTT_14525	E3RCJ7	E3RYC5	AAA domain-containing protein; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.999
PTT_00527	PTT_14578	E3RCJ7	E3RYG4	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
PTT_00527	PTT_17472	E3RCJ7	E3S4J1	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999
PTT_00527	PTT_17801	E3RCJ7	E3S5A3	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
PTT_07229	PTT_00527	E3RH64	E3RCJ7	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
PTT_07229	PTT_07356	E3RH64	E3RHG9	AAA domain-containing protein; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.999
PTT_07229	PTT_07452	E3RH64	E3RHN3	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
PTT_07229	PTT_08703	E3RH64	E3RKE6	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
PTT_07229	PTT_10297	E3RH64	E3RNX6	AAA domain-containing protein; Belongs to the AAA ATPase family.	PCI domain-containing protein.	0.999
PTT_07229	PTT_11976	E3RH64	E3RSR3	AAA domain-containing protein; Belongs to the AAA ATPase family.	Ubiquitin carboxyl-terminal hydrolase.	0.999
PTT_07229	PTT_14044	E3RH64	E3RXD8	AAA domain-containing protein; Belongs to the AAA ATPase family.	VWFA domain-containing protein.	0.999
PTT_07229	PTT_14525	E3RH64	E3RYC5	AAA domain-containing protein; Belongs to the AAA ATPase family.	MPN domain-containing protein.	0.999
PTT_07229	PTT_14578	E3RH64	E3RYG4	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999