(15 nodes) Citrate cycle (TCA cycle), and Glutamine family amino acid catabolic process network (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	DVU_0841	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155. (393 aa)
	DVU_0964	Identified by match to protein family HMM PF00208. (997 aa)
	porA	Pyruvate ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GP:43498; match to protein family HMM PF01558; match to protein family HMM PF01855. (578 aa)
	porB	Pyruvate ferredoxin oxidoreductase, beta subunit; Identified by similarity to GP:1565184. (284 aa)
	DVU_1944	Pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. (90 aa)
	DVU_1945	Pyruvate ferredoxin oxidoreductase, alpha subunit, putative; Identified by match to protein family HMM PF01855. (382 aa)
	DVU_1946	Pyruvate ferredoxin oxidoreductase, beta subunit, putative; Identified by match to protein family HMM PF02775. (276 aa)
	DVU_1947	Pyruvate ferredoxin oxidoreductase, gamma subunit, putative; Identified by match to protein family HMM PF01558. (207 aa)
	poR	Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855. (1215 aa)
	aspB	Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155. (390 aa)
	putA	Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. (1006 aa)
	DVU_3347	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558. (182 aa)
	DVU_3348	Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative. (245 aa)
	DVU_3349	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; Identified by match to protein family HMM PF01855. (357 aa)
	DVU_3350	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (77 aa)

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0841	DVU_0964	DVU_0841	DVU_0964	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Identified by match to protein family HMM PF00208.	0.900
DVU_0841	DVU_1944	DVU_0841	DVU_1944	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037.	0.616
DVU_0841	DVU_1945	DVU_0841	DVU_1945	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin oxidoreductase, alpha subunit, putative; Identified by match to protein family HMM PF01855.	0.804
DVU_0841	DVU_1946	DVU_0841	DVU_1946	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin oxidoreductase, beta subunit, putative; Identified by match to protein family HMM PF02775.	0.806
DVU_0841	DVU_1947	DVU_0841	DVU_1947	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin oxidoreductase, gamma subunit, putative; Identified by match to protein family HMM PF01558.	0.615
DVU_0841	DVU_3347	DVU_0841	DVU_3347	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	0.611
DVU_0841	DVU_3348	DVU_0841	DVU_3348	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative.	0.807
DVU_0841	DVU_3349	DVU_0841	DVU_3349	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; Identified by match to protein family HMM PF01855.	0.808
DVU_0841	DVU_3350	DVU_0841	DVU_3350	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.	0.620
DVU_0841	aspB	DVU_0841	DVU_3223	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Aspartate aminotransferase; Identified by similarity to SP:P23034; match to protein family HMM PF00155.	0.921
DVU_0841	poR	DVU_0841	DVU_3025	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.	0.509
DVU_0841	porA	DVU_0841	DVU_1569	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GP:43498; match to protein family HMM PF01558; match to protein family HMM PF01855.	0.831
DVU_0841	porB	DVU_0841	DVU_1570	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Pyruvate ferredoxin oxidoreductase, beta subunit; Identified by similarity to GP:1565184.	0.806
DVU_0841	putA	DVU_0841	DVU_3319	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.	0.960
DVU_0964	DVU_0841	DVU_0964	DVU_0841	Identified by match to protein family HMM PF00208.	Aspartate aminotransferase, putative; Identified by similarity to GP:15826454; match to protein family HMM PF00155.	0.900
DVU_0964	DVU_1944	DVU_0964	DVU_1944	Identified by match to protein family HMM PF00208.	Pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037.	0.800
DVU_0964	DVU_1945	DVU_0964	DVU_1945	Identified by match to protein family HMM PF00208.	Pyruvate ferredoxin oxidoreductase, alpha subunit, putative; Identified by match to protein family HMM PF01855.	0.800
DVU_0964	DVU_1946	DVU_0964	DVU_1946	Identified by match to protein family HMM PF00208.	Pyruvate ferredoxin oxidoreductase, beta subunit, putative; Identified by match to protein family HMM PF02775.	0.800
DVU_0964	DVU_1947	DVU_0964	DVU_1947	Identified by match to protein family HMM PF00208.	Pyruvate ferredoxin oxidoreductase, gamma subunit, putative; Identified by match to protein family HMM PF01558.	0.800
DVU_0964	DVU_3347	DVU_0964	DVU_3347	Identified by match to protein family HMM PF00208.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	0.801

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