(12 nodes) Snf7, and MIT domain network (Guillardia theta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPS20	Vacuolar protein sorting protein 20. (308 aa)
	L1I6G4_GUITC	Uncharacterized protein. (221 aa)
	VPS4	Vacuolar protein sorting protein 4; Belongs to the AAA ATPase family. (443 aa)
	L1IGC1_GUITC	Uncharacterized protein. (238 aa)
	VPS32	Vacuolar protein sorting protein 32. (228 aa)
	L1IRR7_GUITC	Uncharacterized protein. (222 aa)
	VPS24	Vacuolar protein sorting protein 24. (225 aa)
	VPS2B	Vacuolar protein sorting 2B. (198 aa)
	VPS46	Vacuolar protein sorting protein 46. (204 aa)
	VPS2A	Vacuolar protein sorting 2A. (212 aa)
	VPS60	Vacuolar protein sorting protein 60. (223 aa)
	VTA1	Vps20-associated 1. (327 aa)

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1I6G4_GUITC	L1IGC1_GUITC	L1I6G4	L1IGC1	Uncharacterized protein.	Uncharacterized protein.	0.900
L1I6G4_GUITC	L1IRR7_GUITC	L1I6G4	L1IRR7	Uncharacterized protein.	Uncharacterized protein.	0.875
L1I6G4_GUITC	VPS20	L1I6G4	L1I5P1	Uncharacterized protein.	Vacuolar protein sorting protein 20.	0.948
L1I6G4_GUITC	VPS24	L1I6G4	L1IT11	Uncharacterized protein.	Vacuolar protein sorting protein 24.	0.960
L1I6G4_GUITC	VPS2A	L1I6G4	L1K0R8	Uncharacterized protein.	Vacuolar protein sorting 2A.	0.846
L1I6G4_GUITC	VPS2B	L1I6G4	L1J7C3	Uncharacterized protein.	Vacuolar protein sorting 2B.	0.846
L1I6G4_GUITC	VPS32	L1I6G4	L1IMN0	Uncharacterized protein.	Vacuolar protein sorting protein 32.	0.900
L1I6G4_GUITC	VPS4	L1I6G4	L1IBZ1	Uncharacterized protein.	Vacuolar protein sorting protein 4; Belongs to the AAA ATPase family.	0.954
L1I6G4_GUITC	VPS46	L1I6G4	L1J9G1	Uncharacterized protein.	Vacuolar protein sorting protein 46.	0.890
L1I6G4_GUITC	VPS60	L1I6G4	L1K1I7	Uncharacterized protein.	Vacuolar protein sorting protein 60.	0.933
L1I6G4_GUITC	VTA1	L1I6G4	L1K3G3	Uncharacterized protein.	Vps20-associated 1.	0.793
L1IGC1_GUITC	L1I6G4_GUITC	L1IGC1	L1I6G4	Uncharacterized protein.	Uncharacterized protein.	0.900
L1IGC1_GUITC	L1IRR7_GUITC	L1IGC1	L1IRR7	Uncharacterized protein.	Uncharacterized protein.	0.875
L1IGC1_GUITC	VPS20	L1IGC1	L1I5P1	Uncharacterized protein.	Vacuolar protein sorting protein 20.	0.948
L1IGC1_GUITC	VPS24	L1IGC1	L1IT11	Uncharacterized protein.	Vacuolar protein sorting protein 24.	0.962
L1IGC1_GUITC	VPS2A	L1IGC1	L1K0R8	Uncharacterized protein.	Vacuolar protein sorting 2A.	0.871
L1IGC1_GUITC	VPS2B	L1IGC1	L1J7C3	Uncharacterized protein.	Vacuolar protein sorting 2B.	0.871
L1IGC1_GUITC	VPS32	L1IGC1	L1IMN0	Uncharacterized protein.	Vacuolar protein sorting protein 32.	0.900
L1IGC1_GUITC	VPS4	L1IGC1	L1IBZ1	Uncharacterized protein.	Vacuolar protein sorting protein 4; Belongs to the AAA ATPase family.	0.955
L1IGC1_GUITC	VPS46	L1IGC1	L1J9G1	Uncharacterized protein.	Vacuolar protein sorting protein 46.	0.890