(22 nodes) Endoplasmic reticulum exit site network (Parus major)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEC24D	Protein transport protein Sec24D. (1034 aa)
	PLPP3	Phospholipid phosphatase 3. (302 aa)
	ENSPMJP00000003806	annotation not available (130 aa)
	SEC23B	Protein transport protein Sec23B isoform X1. (802 aa)
	SEC16A	Protein transport protein Sec16A isoform X1. (2416 aa)
	PREB	Prolactin regulatory element-binding protein isoform X1. (416 aa)
	LRRK2	Leucine-rich repeat serine/threonine-protein kinase 2 isoform X1. (2288 aa)
	SEC31A	Protein transport protein Sec31A isoform X1. (1326 aa)
	SEC24A	Protein transport protein Sec24A isoform X1. (1092 aa)
	SAR1B	GTP-binding protein SAR1b. (197 aa)
	SEC24B	Protein transport protein Sec24B isoform X1. (1233 aa)
	ENSPMJP00000013410	annotation not available (193 aa)
	TFG	Protein TFG isoform X1. (419 aa)
	PDCD6IP	Programmed cell death 6-interacting protein isoform X1. (879 aa)
	MIA3	Melanoma inhibitory activity protein 3 isoform X1. (1970 aa)
	MPPE1	Ethanolamine phosphate phosphodiesterase. (408 aa)
	SAR1A	GTP-binding protein SAR1a. (198 aa)
	SEC24C	Protein transport protein Sec24C isoform X1. (1107 aa)
	SEC31B	SEC31 homolog B, COPII coat complex component. (1020 aa)
	SEC23A	Protein transport protein Sec23A. (765 aa)
	MIA2	CTAGE family member 5 isoform X1. (1366 aa)
	SEC16B	Protein transport protein Sec16B isoform X1. (1008 aa)

Your Current Organism:

Parus major

NCBI taxonomy Id: 9157
Other names: Great Tit, Kohlmeise, P. major

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMJP00000003806	PREB	ENSPMJP00000003806	ENSPMJP00000009017	annotation not available	Prolactin regulatory element-binding protein isoform X1.	0.465
ENSPMJP00000003806	SAR1A	ENSPMJP00000003806	ENSPMJP00000020623	annotation not available	GTP-binding protein SAR1a.	0.663
ENSPMJP00000003806	SAR1B	ENSPMJP00000003806	ENSPMJP00000012537	annotation not available	GTP-binding protein SAR1b.	0.663
ENSPMJP00000003806	SEC23A	ENSPMJP00000003806	ENSPMJP00000022533	annotation not available	Protein transport protein Sec23A.	0.785
ENSPMJP00000003806	SEC23B	ENSPMJP00000003806	ENSPMJP00000004925	annotation not available	Protein transport protein Sec23B isoform X1.	0.785
ENSPMJP00000003806	SEC24A	ENSPMJP00000003806	ENSPMJP00000012528	annotation not available	Protein transport protein Sec24A isoform X1.	0.783
ENSPMJP00000003806	SEC24B	ENSPMJP00000003806	ENSPMJP00000013259	annotation not available	Protein transport protein Sec24B isoform X1.	0.783
ENSPMJP00000003806	SEC24C	ENSPMJP00000003806	ENSPMJP00000020861	annotation not available	Protein transport protein Sec24C isoform X1.	0.793
ENSPMJP00000003806	SEC24D	ENSPMJP00000003806	ENSPMJP00000009066	annotation not available	Protein transport protein Sec24D.	0.793
ENSPMJP00000003806	SEC31A	ENSPMJP00000003806	ENSPMJP00000011467	annotation not available	Protein transport protein Sec31A isoform X1.	0.707
ENSPMJP00000003806	SEC31B	ENSPMJP00000003806	ENSPMJP00000021538	annotation not available	SEC31 homolog B, COPII coat complex component.	0.707
ENSPMJP00000003806	TFG	ENSPMJP00000003806	ENSPMJP00000014714	annotation not available	Protein TFG isoform X1.	0.690
ENSPMJP00000013410	PREB	ENSPMJP00000013410	ENSPMJP00000009017	annotation not available	Prolactin regulatory element-binding protein isoform X1.	0.439
ENSPMJP00000013410	SAR1A	ENSPMJP00000013410	ENSPMJP00000020623	annotation not available	GTP-binding protein SAR1a.	0.635
ENSPMJP00000013410	SAR1B	ENSPMJP00000013410	ENSPMJP00000012537	annotation not available	GTP-binding protein SAR1b.	0.635
ENSPMJP00000013410	SEC23A	ENSPMJP00000013410	ENSPMJP00000022533	annotation not available	Protein transport protein Sec23A.	0.755
ENSPMJP00000013410	SEC23B	ENSPMJP00000013410	ENSPMJP00000004925	annotation not available	Protein transport protein Sec23B isoform X1.	0.755
ENSPMJP00000013410	SEC24A	ENSPMJP00000013410	ENSPMJP00000012528	annotation not available	Protein transport protein Sec24A isoform X1.	0.751
ENSPMJP00000013410	SEC24B	ENSPMJP00000013410	ENSPMJP00000013259	annotation not available	Protein transport protein Sec24B isoform X1.	0.751
ENSPMJP00000013410	SEC24C	ENSPMJP00000013410	ENSPMJP00000020861	annotation not available	Protein transport protein Sec24C isoform X1.	0.765