STRINGSTRING
mdoG mdoG pgi pgi otsA otsA otsB otsB ANC42918.1 ANC42918.1 ANC43135.1 ANC43135.1 ANC46920.1 ANC46920.1 mgtA_1 mgtA_1 pimF pimF lpxA_2 lpxA_2 ANC43202.1 ANC43202.1 arnB_2 arnB_2 A6P55_03120 A6P55_03120 fbp_1 fbp_1 ANC43603.1 ANC43603.1 fda fda rfaF rfaF rmlA1 rmlA1 tibC tibC lpxK lpxK kdsB kdsB ANC47055.1 ANC47055.1 oatA oatA bcsB bcsB bcsC bcsC bcsA bcsA ANC46780.1 ANC46780.1 ANC46604.1 ANC46604.1 ANC47486.1 ANC47486.1 ANC46598.1 ANC46598.1 ANC46594.1 ANC46594.1 A6P55_22830 A6P55_22830 ANC46582.1 ANC46582.1 ANC46580.1 ANC46580.1 arnT_2 arnT_2 ANC46526.1 ANC46526.1 ppsA ppsA lpxB lpxB lpxA_1 lpxA_1 fabZ fabZ lpxD lpxD arnT_1 arnT_1 ANC46398.1 ANC46398.1 arnB_1 arnB_1 arnC arnC arnD arnD lpxH lpxH tpiA tpiA kdsA kdsA yfkJ yfkJ ANC46087.1 ANC46087.1 ANC46085.1 ANC46085.1 rfaL_2 rfaL_2 ANC45963.1 ANC45963.1 pagP pagP ywqF ywqF rlp2 rlp2 dkgB dkgB mdoG-2 mdoG-2 kdsC kdsC gpmA gpmA ANC45101.1 ANC45101.1 glmU glmU ANC44831.1 ANC44831.1 pckG pckG sdaA sdaA gmhA gmhA ANC44556.1 ANC44556.1 ANC47167.1 ANC47167.1 ANC47166.1 ANC47166.1 ANC44552.1 ANC44552.1 capD_2 capD_2 ANC44544.1 ANC44544.1 ANC44543.1 ANC44543.1 ANC44423.1 ANC44423.1 ANC47137.1 ANC47137.1 ANC44358.1 ANC44358.1 mshA mshA ANC44356.1 ANC44356.1 ANC44355.1 ANC44355.1 ANC44354.1 ANC44354.1 ANC44353.1 ANC44353.1 ANC44352.1 ANC44352.1 ANC47134.1 ANC47134.1 yfdH yfdH gph_1 gph_1 rpe rpe lpxC lpxC tktA tktA ANC44204.1 ANC44204.1 wecA wecA ANC44142.1 ANC44142.1 ANC44141.1 ANC44141.1 pimB_2 pimB_2 pimB_1 pimB_1 ANC44138.1 ANC44138.1 rfaC rfaC waaA waaA ANC44085.1 ANC44085.1 rfaL_1 rfaL_1 mdoH mdoH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
mdoGGlucan biosynthesis protein G; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (517 aa)
pgiHypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family. (552 aa)
otsAAlpha,alpha-trehalose-phosphate synthase; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family. (472 aa)
otsBHypothetical protein; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (242 aa)
ANC42918.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (637 aa)
ANC43135.1UDP phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
ANC46920.1UDP-2,3-diacylglucosamine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
mgtA_1Alpha-mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
pimFGlycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
lpxA_2Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
ANC43202.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
arnB_2dTDP-4-amino-4,6-dideoxygalactose transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (381 aa)
A6P55_03120tRNA-Pro; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
fbp_1Fructose-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FBPase class 1 family. (337 aa)
ANC43603.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
fdaFructose-1,6-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. (354 aa)
rfaFLipopolysaccharide heptosyltransferase II; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
rmlA1Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (295 aa)
tibCAutotransporter strand-loop-strand O-heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
lpxKTetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). (325 aa)
kdsB3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (262 aa)
ANC47055.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
oatAAcyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
bcsBHypothetical protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family. (789 aa)
bcsCHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1297 aa)
bcsACellulose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)
ANC46780.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
ANC46604.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (379 aa)
ANC47486.1ADP-heptose--LPS heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
ANC46598.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
ANC46594.1Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
A6P55_22830Glycogen debranching enzyme; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (594 aa)
ANC46582.11,4-alpha-glucan branching enzyme; Catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; Derived by automated computational analysis using gene prediction method: Protein Homology. (743 aa)
ANC46580.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1107 aa)
arnT_24-amino-4-deoxy-L-arabinose transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
ANC46526.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
ppsAPhosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (796 aa)
lpxBlipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (391 aa)
lpxA_1acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (263 aa)
fabZ3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. (152 aa)
lpxDUDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. (365 aa)
arnT_14-amino-4-deoxy-L-arabinose transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
ANC46398.14-amino-4-deoxy-L-arabinose transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
arnB_1Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (388 aa)
arnCUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
arnDChitin deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
lpxHUDP-2,3-diacylglucosamine diphosphatase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (273 aa)
tpiATriose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (255 aa)
kdsA3-deoxy-8-phosphooctulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the KdsA family. (284 aa)
yfkJPhosphotyrosine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (158 aa)
ANC46087.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (170 aa)
ANC46085.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (254 aa)
rfaL_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (431 aa)
ANC45963.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (137 aa)
pagPHypothetical protein; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors. (202 aa)
ywqFUDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
rlp2Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RuBisCO large chain family. (430 aa)
dkgB2,5-didehydrogluconate reductase B; Catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
mdoG-2Glucan biosynthesis protein G; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (515 aa)
kdsC3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
gpmAPhosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (248 aa)
ANC45101.1L-serine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
glmUGlucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (453 aa)
ANC44831.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (572 aa)
pckGPhosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (623 aa)
sdaAL-serine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family. (467 aa)
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. (195 aa)
ANC44556.1Lipopolysaccharide biosynthesis protein RfbH; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
ANC47167.1Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
ANC47166.1UDP-N-acetyl glucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
ANC44552.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (399 aa)
capD_2UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
ANC44544.1UDP-N-acetyl glucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
ANC44543.1Glycosyltransferase WbuB; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
ANC44423.1Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
ANC47137.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
ANC44358.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
mshAGlycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
ANC44356.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (325 aa)
ANC44355.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
ANC44354.1Penicillin-binding protein activator LpoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
ANC44353.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1376 aa)
ANC44352.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (923 aa)
ANC47134.1Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
yfdHBactoprenol glucosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
gph_1Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. (238 aa)
rpeRibulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (226 aa)
lpxCUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. (304 aa)
tktATransketolase; Catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family. (670 aa)
ANC44204.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (287 aa)
wecAGlycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
ANC44142.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
ANC44141.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
pimB_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (378 aa)
pimB_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
ANC44138.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (405 aa)
rfaCLipopolysaccharide heptosyltransferase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
waaA3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (435 aa)
ANC44085.1Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
rfaL_1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (408 aa)
mdoHGlucan biosynthesis glucosyltransferase H; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (886 aa)
Your Current Organism:
Pandoraea pnomenusa
NCBI taxonomy Id: 93220
Other names: ATCC BAA-63, ATCC:BAA:63, CCM 4978, CCUG 38742, CIP 106626, DSM 16536, LMG 18087, LMG:18087, NCTC 13160, P. pnomenusa, Pandoraea pnomenusa Coenye et al. 2000, Pandoraea sp. RB-44
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