(18 nodes) Protein autoprocessing, and Pectinacetylesterase network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_00161	Uncharacterized protein. (459 aa)
	PTSG_00376	SSD domain-containing protein. (1615 aa)
	PTSG_01376	ULK protein kinase. (1528 aa)
	PTSG_11852	ULK protein kinase. (1747 aa)
	PTSG_05169	SSD domain-containing protein. (1639 aa)
	PTSG_06049	Uncharacterized protein. (519 aa)
	PTSG_07260	Uncharacterized protein. (766 aa)
	PTSG_06952	Uncharacterized protein. (1064 aa)
	PTSG_06680	Uncharacterized protein. (645 aa)
	PTSG_08068	HintN domain-containing protein. (327 aa)
	PTSG_08223	Uncharacterized protein. (399 aa)
	PTSG_07389	Uncharacterized protein. (869 aa)
	PTSG_07446	HintN domain-containing protein. (320 aa)
	PTSG_07447	HintN domain-containing protein. (669 aa)
	PTSG_09162	HintN domain-containing protein. (451 aa)
	PTSG_10352	HintN domain-containing protein. (706 aa)
	PTSG_10843	Uncharacterized protein. (326 aa)
	PTSG_10584	HintN domain-containing protein. (437 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00376	PTSG_06952	F2TWB0	F2UFA0	SSD domain-containing protein.	Uncharacterized protein.	0.414
PTSG_00376	PTSG_07389	F2TWB0	F2UIJ9	SSD domain-containing protein.	Uncharacterized protein.	0.637
PTSG_00376	PTSG_07446	F2TWB0	F2UIR3	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_00376	PTSG_07447	F2TWB0	F2UIR4	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_00376	PTSG_08068	F2TWB0	F2UHW8	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_00376	PTSG_09162	F2TWB0	F2UMW8	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_00376	PTSG_10352	F2TWB0	F2UR23	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_00376	PTSG_10584	F2TWB0	F2URS4	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_01376	PTSG_11852	F2U060	F2U1K8	ULK protein kinase.	ULK protein kinase.	0.432
PTSG_05169	PTSG_06952	F2UAQ0	F2UFA0	SSD domain-containing protein.	Uncharacterized protein.	0.414
PTSG_05169	PTSG_07389	F2UAQ0	F2UIJ9	SSD domain-containing protein.	Uncharacterized protein.	0.637
PTSG_05169	PTSG_07446	F2UAQ0	F2UIR3	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_05169	PTSG_07447	F2UAQ0	F2UIR4	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_05169	PTSG_08068	F2UAQ0	F2UHW8	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_05169	PTSG_09162	F2UAQ0	F2UMW8	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_05169	PTSG_10352	F2UAQ0	F2UR23	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_05169	PTSG_10584	F2UAQ0	F2URS4	SSD domain-containing protein.	HintN domain-containing protein.	0.637
PTSG_06680	PTSG_07260	F2UFP5	F2UEI5	Uncharacterized protein.	Uncharacterized protein.	0.414
PTSG_06680	PTSG_11852	F2UFP5	F2U1K8	Uncharacterized protein.	ULK protein kinase.	0.457
PTSG_06952	PTSG_00376	F2UFA0	F2TWB0	Uncharacterized protein.	SSD domain-containing protein.	0.414

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