(41 nodes) Retrograde transport at the Trans-Golgi-Network, and SNAP receptor activity network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_11557	Uncharacterized protein. (840 aa)
	PTSG_00192	t-SNARE coiled-coil homology domain-containing protein. (217 aa)
	PTSG_00209	GRASP55_65 domain-containing protein. (529 aa)
	PTSG_00285	t-SNARE coiled-coil homology domain-containing protein. (106 aa)
	PTSG_00414	t-SNARE coiled-coil homology domain-containing protein. (247 aa)
	PTSG_00510	V-SNARE coiled-coil homology domain-containing protein. (1595 aa)
	PTSG_00563	Uncharacterized protein. (535 aa)
	PTSG_00606	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (605 aa)
	PTSG_00838	Vacuolar protein sorting 45A; Belongs to the STXBP/unc-18/SEC1 family. (567 aa)
	PTSG_11682	Vesicle-fusing ATPase; Belongs to the AAA ATPase family. (613 aa)
	PTSG_11696	Uncharacterized protein. (305 aa)
	PTSG_03168	Uncharacterized protein. (892 aa)
	PTSG_03305	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (301 aa)
	PTSG_03875	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	PTSG_03656	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (345 aa)
	PTSG_03684	TMF_TATA_bd domain-containing protein. (868 aa)
	PTSG_04161	t-SNARE coiled-coil homology domain-containing protein. (128 aa)
	PTSG_04534	Uncharacterized protein. (945 aa)
	PTSG_12177	Uncharacterized protein. (218 aa)
	PTSG_04972	Uncharacterized protein. (1081 aa)
	PTSG_04797	TPR_REGION domain-containing protein. (292 aa)
	PTSG_05416	t-SNARE coiled-coil homology domain-containing protein. (214 aa)
	PTSG_06406	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function. (658 aa)
	PTSG_06126	Uncharacterized protein. (424 aa)
	PTSG_06239	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (197 aa)
	PTSG_06276	Uncharacterized protein. (754 aa)
	PTSG_06280	Peptidylprolyl isomerase. (1455 aa)
	PTSG_05951	Uncharacterized protein. (611 aa)
	PTSG_06874	Uncharacterized protein. (772 aa)
	PTSG_06981	Uncharacterized protein. (1077 aa)
	PTSG_07851	DUF2263 domain-containing protein. (470 aa)
	PTSG_07896	RIC1 domain-containing protein. (1330 aa)
	PTSG_07909	Uncharacterized protein. (890 aa)
	PTSG_08115	Uncharacterized protein. (783 aa)
	PTSG_09567	Uncharacterized protein. (422 aa)
	PTSG_09791	AAA domain-containing protein; Belongs to the AAA ATPase family. (463 aa)
	PTSG_09792	IPT/TIG domain-containing protein. (374 aa)
	PTSG_11105	V-SNARE coiled-coil homology domain-containing protein. (145 aa)
	PTSG_10971	Uncharacterized protein. (74 aa)
	PTSG_11291	Cog4 domain-containing protein. (548 aa)
	PTSG_11445	Small GTP binding protein RAB6A. (207 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00192	PTSG_00285	F2TVS4	F2TW19	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.671
PTSG_00192	PTSG_00414	F2TVS4	F2TWE8	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.999
PTSG_00192	PTSG_00510	F2TVS4	F2TWN8	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.978
PTSG_00192	PTSG_00563	F2TVS4	F2TWU4	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.579
PTSG_00192	PTSG_00606	F2TVS4	F2TWY8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.422
PTSG_00192	PTSG_00838	F2TVS4	F2TXM2	t-SNARE coiled-coil homology domain-containing protein.	Vacuolar protein sorting 45A; Belongs to the STXBP/unc-18/SEC1 family.	0.915
PTSG_00192	PTSG_03168	F2TVS4	F2U4F2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.784
PTSG_00192	PTSG_03305	F2TVS4	F2U4T1	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.995
PTSG_00192	PTSG_03656	F2TVS4	F2U679	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.997
PTSG_00192	PTSG_03875	F2TVS4	F2U5M8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.987
PTSG_00192	PTSG_04161	F2TVS4	F2U6S4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.966
PTSG_00192	PTSG_04534	F2TVS4	F2U7Q2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.783
PTSG_00192	PTSG_04797	F2TVS4	F2U9Q6	t-SNARE coiled-coil homology domain-containing protein.	TPR_REGION domain-containing protein.	0.998
PTSG_00192	PTSG_04972	F2TVS4	F2U956	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.714
PTSG_00192	PTSG_05416	F2TVS4	F2UAD4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.909
PTSG_00192	PTSG_06126	F2TVS4	F2UC09	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.813
PTSG_00192	PTSG_06239	F2TVS4	F2UCC2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.651
PTSG_00192	PTSG_06276	F2TVS4	F2UCG0	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.764
PTSG_00192	PTSG_06406	F2TVS4	F2UBY0	t-SNARE coiled-coil homology domain-containing protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.821
PTSG_00192	PTSG_06874	F2TVS4	F2UF20	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.803

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