(25 nodes) Embryonic morphogenesis network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_09414	CGI-53 protein. (421 aa)
	PTSG_09316	Uncharacterized protein. (605 aa)
	PTSG_07089	Uncharacterized protein. (989 aa)
	PTSG_05961	Uncharacterized protein. (243 aa)
	PTSG_05943	Uncharacterized protein. (243 aa)
	PTSG_05886	Uncharacterized protein. (963 aa)
	PTSG_05772	WD_REPEATS_REGION domain-containing protein. (1044 aa)
	PTSG_04339	Uncharacterized protein. (1150 aa)
	PTSG_03946	Lysosomal alpha-N-acetyl glucosaminidase. (820 aa)
	PTSG_04256	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (926 aa)
	PTSG_02918	Myosin; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1223 aa)
	PTSG_02764	Uncharacterized protein. (372 aa)
	PTSG_02317	PDZ domain-containing protein. (237 aa)
	PTSG_02277	Uncharacterized protein. (490 aa)
	PTSG_01922	Uncharacterized protein. (957 aa)
	PTSG_00388	UDP-glucose 6-dehydrogenase. (463 aa)
	PTSG_00317	Uncharacterized protein. (1543 aa)
	PTSG_00295	Uncharacterized protein. (624 aa)
	PTSG_11106	Uncharacterized protein. (471 aa)
	PTSG_10626	Uncharacterized protein. (566 aa)
	PTSG_13150	Uncharacterized protein. (1338 aa)
	PTSG_11340	Alpha-N-acetylglucosaminidase. (696 aa)
	PTSG_13074	TK/SYK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1498 aa)
	PTSG_10911	Uncharacterized protein. (4365 aa)
	PTSG_10740	Uncharacterized protein. (1352 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00295	PTSG_00317	F2TW29	F2TW52	Uncharacterized protein.	Uncharacterized protein.	0.481
PTSG_00295	PTSG_05772	F2TW29	F2UB67	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.514
PTSG_00295	PTSG_09414	F2TW29	F2UMJ9	Uncharacterized protein.	CGI-53 protein.	0.493
PTSG_00317	PTSG_00295	F2TW52	F2TW29	Uncharacterized protein.	Uncharacterized protein.	0.481
PTSG_00317	PTSG_02918	F2TW52	F2U3Q4	Uncharacterized protein.	Myosin; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.452
PTSG_00317	PTSG_05772	F2TW52	F2UB67	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.587
PTSG_00317	PTSG_11106	F2TW52	F2US57	Uncharacterized protein.	Uncharacterized protein.	0.470
PTSG_02317	PTSG_09414	F2U1V0	F2UMJ9	PDZ domain-containing protein.	CGI-53 protein.	0.483
PTSG_02918	PTSG_00317	F2U3Q4	F2TW52	Myosin; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.452
PTSG_03946	PTSG_11340	F2U7C1	F2UT44	Lysosomal alpha-N-acetyl glucosaminidase.	Alpha-N-acetylglucosaminidase.	0.917
PTSG_04339	PTSG_09414	F2U896	F2UMJ9	Uncharacterized protein.	CGI-53 protein.	0.565
PTSG_04339	PTSG_10740	F2U896	F2UQ88	Uncharacterized protein.	Uncharacterized protein.	0.567
PTSG_05772	PTSG_00295	F2UB67	F2TW29	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.514
PTSG_05772	PTSG_00317	F2UB67	F2TW52	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.587
PTSG_05772	PTSG_11106	F2UB67	F2US57	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.817
PTSG_07089	PTSG_09414	F2UE09	F2UMJ9	Uncharacterized protein.	CGI-53 protein.	0.483
PTSG_09316	PTSG_09414	F2UMA2	F2UMJ9	Uncharacterized protein.	CGI-53 protein.	0.483
PTSG_09414	PTSG_00295	F2UMJ9	F2TW29	CGI-53 protein.	Uncharacterized protein.	0.493
PTSG_09414	PTSG_02317	F2UMJ9	F2U1V0	CGI-53 protein.	PDZ domain-containing protein.	0.483
PTSG_09414	PTSG_04339	F2UMJ9	F2U896	CGI-53 protein.	Uncharacterized protein.	0.565

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