(43 nodes) SWI/SNF superfamily-type complex network (Salpingoeca rosetta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTSG_06050	Uncharacterized protein. (1088 aa)
	PTSG_12481	Uncharacterized protein; Belongs to the actin family. (455 aa)
	PTSG_06661	Snf family helicase. (3098 aa)
	PTSG_07699	Uncharacterized protein. (637 aa)
	PTSG_12670	Bromo domain-containing protein. (1413 aa)
	PTSG_07415	PAPA-1 domain-containing protein. (284 aa)
	PTSG_08750	Uncharacterized protein. (422 aa)
	PTSG_12819	Uncharacterized protein. (1757 aa)
	PTSG_12911	Bromo domain-containing protein. (154 aa)
	PTSG_12991	NFRKB_winged domain-containing protein. (772 aa)
	PTSG_12992	Uncharacterized protein. (881 aa)
	PTSG_10267	BRG1 protein. (1726 aa)
	PTSG_11372	Uncharacterized protein. (717 aa)
	PTSG_04375	Uncharacterized protein. (1669 aa)
	PTSG_12193	Uncharacterized protein. (2049 aa)
	PTSG_04268	Uncharacterized protein; Belongs to the actin family. (676 aa)
	PTSG_04243	Uncharacterized protein. (582 aa)
	PTSG_04242	Uncharacterized protein. (396 aa)
	PTSG_04234	Uncharacterized protein. (285 aa)
	PTSG_04175	Uncharacterized protein; Belongs to the actin family. (778 aa)
	PTSG_04083	Uncharacterized protein. (2008 aa)
	PTSG_03649	Uncharacterized protein. (718 aa)
	PTSG_03093	HMG box domain-containing protein. (543 aa)
	PTSG_02551	PHD-type domain-containing protein. (830 aa)
	PTSG_02424	Uncharacterized protein. (204 aa)
	PTSG_11879	Uncharacterized protein. (978 aa)
	PTSG_02326	Uncharacterized protein; Belongs to the actin family. (406 aa)
	PTSG_02199	Uncharacterized protein. (2956 aa)
	PTSG_01126	SWIB domain-containing protein. (436 aa)
	PTSG_01571	Uncharacterized protein. (1083 aa)
	PTSG_01938	Bromo domain-containing protein. (980 aa)
	PTSG_11773	SANT_DAMP1_like domain-containing protein. (597 aa)
	PTSG_01032	RFX-type winged-helix domain-containing protein. (1038 aa)
	PTSG_01004	Uncharacterized protein. (940 aa)
	PTSG_00780	Uncharacterized protein. (773 aa)
	PTSG_00442	Transcription activator. (1106 aa)
	PTSG_00241	Bromo domain-containing protein. (816 aa)
	PTSG_00020	Uncharacterized protein. (777 aa)
	PTSG_04494	Uncharacterized protein. (564 aa)
	PTSG_04709	Uncharacterized protein. (1576 aa)
	PTSG_05311	SNF2 family DNA-dependent ATPase. (2192 aa)
	PTSG_05393	Uncharacterized protein. (760 aa)
	PTSG_07109	HIT-type domain-containing protein. (278 aa)

Your Current Organism:

Salpingoeca rosetta

NCBI taxonomy Id: 946362
Other names: Proterospongia sp. ATCC 50818, S. rosetta, Salpingoeca rosetta ATCC 50818, Salpingoeca rosetta ATCC50818, Salpingoeca rosetta Dayel et al. 2011, Salpingoeca sp. ATCC 50818, Salpingoeca sp. ATCC50818

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTSG_00020	PTSG_02424	F2TVA8	F2U261	Uncharacterized protein.	Uncharacterized protein.	0.850
PTSG_00020	PTSG_11773	F2TVA8	F2TYR1	Uncharacterized protein.	SANT_DAMP1_like domain-containing protein.	0.797
PTSG_00020	PTSG_12481	F2TVA8	F2UEQ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.697
PTSG_00442	PTSG_01126	F2TWH7	F2U0W1	Transcription activator.	SWIB domain-containing protein.	0.421
PTSG_00442	PTSG_01571	F2TWH7	F2U0R1	Transcription activator.	Uncharacterized protein.	0.917
PTSG_00442	PTSG_02199	F2TWH7	F2U1H9	Transcription activator.	Uncharacterized protein.	0.451
PTSG_00442	PTSG_03093	F2TWH7	F2U480	Transcription activator.	HMG box domain-containing protein.	0.687
PTSG_00442	PTSG_04234	F2TWH7	F2U6Z4	Transcription activator.	Uncharacterized protein.	0.773
PTSG_00442	PTSG_04268	F2TWH7	F2U731	Transcription activator.	Uncharacterized protein; Belongs to the actin family.	0.486
PTSG_00442	PTSG_04375	F2TWH7	F2U8D2	Transcription activator.	Uncharacterized protein.	0.522
PTSG_00442	PTSG_04494	F2TWH7	F2U8Q6	Transcription activator.	Uncharacterized protein.	0.451
PTSG_00442	PTSG_06050	F2TWH7	F2UDJ2	Transcription activator.	Uncharacterized protein.	0.520
PTSG_00442	PTSG_07699	F2TWH7	F2UHI3	Transcription activator.	Uncharacterized protein.	0.451
PTSG_00442	PTSG_12481	F2TWH7	F2UEQ3	Transcription activator.	Uncharacterized protein; Belongs to the actin family.	0.411
PTSG_00442	PTSG_12670	F2TWH7	F2UHQ2	Transcription activator.	Bromo domain-containing protein.	0.451
PTSG_00780	PTSG_01032	F2TXG4	F2TY71	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.719
PTSG_00780	PTSG_01126	F2TXG4	F2U0W1	Uncharacterized protein.	SWIB domain-containing protein.	0.899
PTSG_00780	PTSG_04083	F2TXG4	F2U6J3	Uncharacterized protein.	Uncharacterized protein.	0.722
PTSG_00780	PTSG_04175	F2TXG4	F2U6T7	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.407
PTSG_00780	PTSG_04375	F2TXG4	F2U8D2	Uncharacterized protein.	Uncharacterized protein.	0.722

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