(6 nodes) Transcription factor GATA network (Gorilla gorilla)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GATA6	GATA binding protein 6. (596 aa)
	G3QD16_GORGO	GATA binding protein 5. (395 aa)
	GATA2	GATA binding protein 2. (480 aa)
	G3R5D7_GORGO	Uncharacterized protein. (366 aa)
	GATA3	GATA binding protein 3. (444 aa)
	GATA1	GATA binding protein 1. (413 aa)

Your Current Organism:

Gorilla gorilla

NCBI taxonomy Id: 9593
Other names: G. gorilla, Troglodytes gorilla, gorilla, western gorilla

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3QD16_GORGO	GATA6	ENSGGOP00000000119	ENSGGOP00000021097	GATA binding protein 5.	GATA binding protein 6.	0.417
G3R5D7_GORGO	GATA3	ENSGGOP00000010510	ENSGGOP00000006027	Uncharacterized protein.	GATA binding protein 3.	0.441
G3R5D7_GORGO	GATA6	ENSGGOP00000010510	ENSGGOP00000021097	Uncharacterized protein.	GATA binding protein 6.	0.446
GATA1	GATA2	ENSGGOP00000018626	ENSGGOP00000006023	GATA binding protein 1.	GATA binding protein 2.	0.824
GATA1	GATA3	ENSGGOP00000018626	ENSGGOP00000006027	GATA binding protein 1.	GATA binding protein 3.	0.521
GATA2	GATA1	ENSGGOP00000006023	ENSGGOP00000018626	GATA binding protein 2.	GATA binding protein 1.	0.824
GATA2	GATA3	ENSGGOP00000006023	ENSGGOP00000006027	GATA binding protein 2.	GATA binding protein 3.	0.616
GATA3	G3R5D7_GORGO	ENSGGOP00000006027	ENSGGOP00000010510	GATA binding protein 3.	Uncharacterized protein.	0.441
GATA3	GATA1	ENSGGOP00000006027	ENSGGOP00000018626	GATA binding protein 3.	GATA binding protein 1.	0.521
GATA3	GATA2	ENSGGOP00000006027	ENSGGOP00000006023	GATA binding protein 3.	GATA binding protein 2.	0.616
GATA6	G3QD16_GORGO	ENSGGOP00000021097	ENSGGOP00000000119	GATA binding protein 6.	GATA binding protein 5.	0.417
GATA6	G3R5D7_GORGO	ENSGGOP00000021097	ENSGGOP00000010510	GATA binding protein 6.	Uncharacterized protein.	0.446