(49 nodes) Vesicle docking network (Panthera pardus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB8B	Ras-related protein Rab-8B. (207 aa)
	RAB12	Ras-related protein Rab-12. (244 aa)
	EXOC4	Exocyst complex component 4 isoform X1. (975 aa)
	YKT6	Synaptobrevin homolog YKT6 isoform X1. (198 aa)
	STX7	Syntaxin-7 isoform X1. (261 aa)
	VPS11	Vacuolar protein sorting-associated protein 11 homolog isoform X1. (941 aa)
	STXBP3	Syntaxin-binding protein 3. (592 aa)
	STX6	Syntaxin-6 isoform X1. (255 aa)
	SCFD2	Sec1 family domain-containing protein 2 isoform X1. (684 aa)
	RAB10	Ras-related protein Rab-10. (200 aa)
	UNC13A	Unc-13 homolog A. (1719 aa)
	STX16-NPEPL1	Syntaxin-16 isoform X1. (326 aa)
	STX1A	Syntaxin-1A isoform X1. (288 aa)
	NDRG4	Protein NDRG4 isoform X1. (391 aa)
	CAV2	Caveolin-2 isoform X1. (162 aa)
	STX2	Syntaxin-2 isoform X1. (278 aa)
	STX5	Syntaxin-5 isoform X1. (355 aa)
	RAB3A	Ras-related protein Rab-3A. (220 aa)
	CEP83	Centrosomal protein of 83 kDa isoform X1. (701 aa)
	TSNARE1	T-SNARE domain-containing protein 1 isoform X1. (508 aa)
	CFTR	Cystic fibrosis transmembrane conductance regulator isoform X1. (1481 aa)
	RAB3B	Ras-related protein Rab-3B. (219 aa)
	STXBP1	Syntaxin-binding protein 1 isoform X1. (574 aa)
	RAB15	Ras-related protein Rab-15 isoform X1. (212 aa)
	STX8	Syntaxin-8 isoform X1. (236 aa)
	RAB13	RAB13, member RAS oncogene family. (203 aa)
	CLN3	Battenin. (438 aa)
	RAB3D	Ras-related protein Rab-3D isoform X1. (219 aa)
	STX12	Syntaxin 12/13. (275 aa)
	STX4	Syntaxin-4 isoform X1. (295 aa)
	EXOC2	Exocyst complex component 2 isoform X1. (924 aa)
	STX1B	Syntaxin-1B isoform X1. (278 aa)
	USO1	General vesicular transport factor p115 isoform X1. (974 aa)
	VPS18	Vacuolar protein sorting-associated protein 18 homolog isoform X1. (973 aa)
	STX19	Syntaxin 11. (294 aa)
	PPFIA3	Liprin-alpha-3. (1180 aa)
	ENSPPRP00000023408	annotation not available (210 aa)
	STX10	Syntaxin-10 isoform X1. (249 aa)
	STX3	Syntaxin-3 isoform X1. (302 aa)
	STX17	Syntaxin 17. (302 aa)
	BVES	Blood vessel epicardial substance isoform X1. (360 aa)
	RAB3C	Ras-related protein Rab-3C isoform X1. (227 aa)
	STXBP2	Syntaxin-binding protein 2 isoform X1. (604 aa)
	UNC13C	Protein unc-13 homolog C isoform X1. (2217 aa)
	CTBP2	C-terminal-binding protein 2 isoform X1. (972 aa)
	UNC13B	Protein unc-13 homolog B isoform X1. (4263 aa)
	RAB8A	Ras-related protein Rab-8A. (207 aa)
	RABEPK	Rab9 effector protein with kelch motifs isoform X1. (372 aa)
	STX11	Syntaxin 11. (287 aa)

Your Current Organism:

Panthera pardus

NCBI taxonomy Id: 9691
Other names: Leo pardus, P. pardus, leopard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAV2	RAB13	ENSPPRP00000006344	ENSPPRP00000016640	Caveolin-2 isoform X1.	RAB13, member RAS oncogene family.	0.431
CEP83	STX5	ENSPPRP00000011513	ENSPPRP00000008119	Centrosomal protein of 83 kDa isoform X1.	Syntaxin-5 isoform X1.	0.528
CEP83	USO1	ENSPPRP00000011513	ENSPPRP00000019044	Centrosomal protein of 83 kDa isoform X1.	General vesicular transport factor p115 isoform X1.	0.535
CFTR	CTBP2	ENSPPRP00000012334	ENSPPRP00000026560	Cystic fibrosis transmembrane conductance regulator isoform X1.	C-terminal-binding protein 2 isoform X1.	0.441
CFTR	STX16-NPEPL1	ENSPPRP00000012334	ENSPPRP00000004459	Cystic fibrosis transmembrane conductance regulator isoform X1.	Syntaxin-16 isoform X1.	0.427
CTBP2	CFTR	ENSPPRP00000026560	ENSPPRP00000012334	C-terminal-binding protein 2 isoform X1.	Cystic fibrosis transmembrane conductance regulator isoform X1.	0.441
ENSPPRP00000023408	RABEPK	ENSPPRP00000023408	ENSPPRP00000028269	annotation not available	Rab9 effector protein with kelch motifs isoform X1.	0.435
ENSPPRP00000023408	STX10	ENSPPRP00000023408	ENSPPRP00000023781	annotation not available	Syntaxin-10 isoform X1.	0.812
ENSPPRP00000023408	STX11	ENSPPRP00000023408	ENSPPRP00000028934	annotation not available	Syntaxin 11.	0.515
ENSPPRP00000023408	STX12	ENSPPRP00000023408	ENSPPRP00000017600	annotation not available	Syntaxin 12/13.	0.609
ENSPPRP00000023408	STX17	ENSPPRP00000023408	ENSPPRP00000025088	annotation not available	Syntaxin 17.	0.616
ENSPPRP00000023408	STX19	ENSPPRP00000023408	ENSPPRP00000020235	annotation not available	Syntaxin 11.	0.454
ENSPPRP00000023408	STX1A	ENSPPRP00000023408	ENSPPRP00000004623	annotation not available	Syntaxin-1A isoform X1.	0.422
ENSPPRP00000023408	STX1B	ENSPPRP00000023408	ENSPPRP00000018996	annotation not available	Syntaxin-1B isoform X1.	0.422
ENSPPRP00000023408	STX3	ENSPPRP00000023408	ENSPPRP00000024633	annotation not available	Syntaxin-3 isoform X1.	0.515
ENSPPRP00000023408	STX4	ENSPPRP00000023408	ENSPPRP00000018709	annotation not available	Syntaxin-4 isoform X1.	0.522
ENSPPRP00000023408	STX5	ENSPPRP00000023408	ENSPPRP00000008119	annotation not available	Syntaxin-5 isoform X1.	0.709
ENSPPRP00000023408	STX6	ENSPPRP00000023408	ENSPPRP00000027878	annotation not available	Syntaxin-6 isoform X1.	0.812
ENSPPRP00000023408	STX8	ENSPPRP00000023408	ENSPPRP00000015456	annotation not available	Syntaxin-8 isoform X1.	0.877
ENSPPRP00000023408	VPS11	ENSPPRP00000023408	ENSPPRP00000003881	annotation not available	Vacuolar protein sorting-associated protein 11 homolog isoform X1.	0.812