(38 nodes) Other types of O-glycan biosynthesis network (Equus caballus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1GALT1C1	C1GALT1 specific chaperone 1. (318 aa)
	POFUT2	Protein O-fucosyltransferase 2. (573 aa)
	RFNG	Beta-1,3-N-acetylglucosaminyltransferase. (328 aa)
	POFUT1	Protein O-fucosyltransferase 1. (391 aa)
	GALNT7	Polypeptide N-acetylgalactosaminyltransferase. (657 aa)
	ST6GAL2	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family. (529 aa)
	GALNT5	Polypeptide N-acetylgalactosaminyltransferase. (940 aa)
	C1GALT1	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily. (375 aa)
	MFNG	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase. (334 aa)
	COLGALT2	Collagen beta(1-O)galactosyltransferase 2. (626 aa)
	POMT2	Protein O-mannosyltransferase 2. (817 aa)
	GALNTL5	Polypeptide N-acetylgalactosaminyltransferase like 5. (448 aa)
	GALNT18	Polypeptide N-acetylgalactosaminyltransferase. (607 aa)
	GALNT14	Polypeptide N-acetylgalactosaminyltransferase. (552 aa)
	GALNT11	Polypeptide N-acetylgalactosaminyltransferase. (609 aa)
	B4GALT3	Beta-1,4-galactosyltransferase 3. (396 aa)
	GALNT1	Polypeptide N-acetylgalactosaminyltransferase. (559 aa)
	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3. (743 aa)
	NIBAN3	Niban apoptosis regulator 3. (623 aa)
	OGT	O-linked N-acetylglucosamine (GlcNAc) transferase. (1046 aa)
	GALNT8	Polypeptide N-acetylgalactosaminyltransferase. (637 aa)
	B4GALT2	Beta-1,4-galactosyltransferase 2. (390 aa)
	POMT1	Protein O-mannosyltransferase 1. (726 aa)
	LOC100065936	Uncharacterized protein. (355 aa)
	ST6GAL1	ST6 beta-galactoside alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family. (406 aa)
	GXYLT2	Glucoside xylosyltransferase 2. (443 aa)
	GALNT9	Polypeptide N-acetylgalactosaminyltransferase. (698 aa)
	GALNT12	Polypeptide N-acetylgalactosaminyltransferase. (580 aa)
	GXYLT1	Glucoside xylosyltransferase 1. (440 aa)
	GALNT6	Polypeptide N-acetylgalactosaminyltransferase. (622 aa)
	GALNT3	Polypeptide N-acetylgalactosaminyltransferase. (633 aa)
	GALNT17	Polypeptide N-acetylgalactosaminyltransferase 17; Belongs to the glycosyltransferase 2 family. GalNAc-T subfamily. (606 aa)
	GALNT15	Polypeptide N-acetylgalactosaminyltransferase. (635 aa)
	POGLUT1	Protein O-glucosyltransferase 1. (392 aa)
	GALNT2	Polypeptide N-acetylgalactosaminyltransferase. (598 aa)
	B3GLCT	Beta 3-glucosyltransferase. (629 aa)
	SAP30L	Polypeptide N-acetylgalactosaminyltransferase. (678 aa)
	LFNG	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase. (543 aa)

Your Current Organism:

Equus caballus

NCBI taxonomy Id: 9796
Other names: E. caballus, Equus przewalskii f. caballus, Equus przewalskii forma caballus, domestic horse, equine, horse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3GLCT	GALNT1	ENSECAP00000042547	ENSECAP00000019852	Beta 3-glucosyltransferase.	Polypeptide N-acetylgalactosaminyltransferase.	0.435
B3GLCT	MFNG	ENSECAP00000042547	ENSECAP00000015401	Beta 3-glucosyltransferase.	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.	0.461
B3GLCT	POFUT2	ENSECAP00000042547	ENSECAP00000004094	Beta 3-glucosyltransferase.	Protein O-fucosyltransferase 2.	0.629
B4GALT2	B4GALT3	ENSECAP00000021715	ENSECAP00000019452	Beta-1,4-galactosyltransferase 2.	Beta-1,4-galactosyltransferase 3.	0.938
B4GALT2	C1GALT1C1	ENSECAP00000021715	ENSECAP00000002771	Beta-1,4-galactosyltransferase 2.	C1GALT1 specific chaperone 1.	0.443
B4GALT2	LOC100065936	ENSECAP00000021715	ENSECAP00000022682	Beta-1,4-galactosyltransferase 2.	Uncharacterized protein.	0.938
B4GALT2	ST6GAL1	ENSECAP00000021715	ENSECAP00000022987	Beta-1,4-galactosyltransferase 2.	ST6 beta-galactoside alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.	0.945
B4GALT2	ST6GAL2	ENSECAP00000021715	ENSECAP00000009700	Beta-1,4-galactosyltransferase 2.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.944
B4GALT3	B4GALT2	ENSECAP00000019452	ENSECAP00000021715	Beta-1,4-galactosyltransferase 3.	Beta-1,4-galactosyltransferase 2.	0.938
B4GALT3	C1GALT1	ENSECAP00000019452	ENSECAP00000010739	Beta-1,4-galactosyltransferase 3.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	0.425
B4GALT3	GALNT11	ENSECAP00000019452	ENSECAP00000018231	Beta-1,4-galactosyltransferase 3.	Polypeptide N-acetylgalactosaminyltransferase.	0.490
B4GALT3	GALNT12	ENSECAP00000019452	ENSECAP00000026891	Beta-1,4-galactosyltransferase 3.	Polypeptide N-acetylgalactosaminyltransferase.	0.531
B4GALT3	GALNT2	ENSECAP00000019452	ENSECAP00000038970	Beta-1,4-galactosyltransferase 3.	Polypeptide N-acetylgalactosaminyltransferase.	0.472
B4GALT3	LOC100065936	ENSECAP00000019452	ENSECAP00000022682	Beta-1,4-galactosyltransferase 3.	Uncharacterized protein.	0.903
B4GALT3	ST6GAL1	ENSECAP00000019452	ENSECAP00000022987	Beta-1,4-galactosyltransferase 3.	ST6 beta-galactoside alpha-2,6-sialyltransferase 1; Belongs to the glycosyltransferase 29 family.	0.928
B4GALT3	ST6GAL2	ENSECAP00000019452	ENSECAP00000009700	Beta-1,4-galactosyltransferase 3.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.915
C1GALT1	B4GALT3	ENSECAP00000010739	ENSECAP00000019452	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Beta-1,4-galactosyltransferase 3.	0.425
C1GALT1	C1GALT1C1	ENSECAP00000010739	ENSECAP00000002771	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	C1GALT1 specific chaperone 1.	0.993
C1GALT1	GALNT1	ENSECAP00000010739	ENSECAP00000019852	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Polypeptide N-acetylgalactosaminyltransferase.	0.811
C1GALT1	GALNT11	ENSECAP00000010739	ENSECAP00000018231	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1; Glycosyltransferase that generates the core 1 O-glycan Gal- beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins; Belongs to the glycosyltransferase 31 family. Beta3-Gal-T subfamily.	Polypeptide N-acetylgalactosaminyltransferase.	0.732