STRINGSTRING
CCDC62 CCDC62 SLC30A9 SLC30A9 STRN STRN BUD31 BUD31 NCOA3 NCOA3 NCOA6 NCOA6 ASXL1 ASXL1 GTF2B GTF2B LRIF1 LRIF1 DCAF13 DCAF13 FOXH1 FOXH1 NCOA7 NCOA7 KDM1A KDM1A PARK7 PARK7 NR1H2 NR1H2 MED25 MED25 DAXX DAXX CRX CRX SMAD3 SMAD3 KDM5D KDM5D DNAAF4 DNAAF4 RXRA RXRA WIPI1 WIPI1 A0A5G2RAG6_PIG A0A5G2RAG6_PIG NR1H4 NR1H4 TAF7L TAF7L GRIP1 GRIP1 MED17 MED17 NRIP1 NRIP1 TACC2 TACC2 NR4A3 NR4A3 ZNF366 ZNF366 NKX3-1 NKX3-1 C1D C1D ARID1A ARID1A DDX5 DDX5 A0A287BJ29_PIG A0A287BJ29_PIG DDX54 DDX54 TOB2 TOB2 VDR VDR LOC106506226 LOC106506226 TCF21 TCF21 PROX1 PROX1 TGFB1I1 TGFB1I1 SRARP SRARP HIF1A HIF1A NRBF2 NRBF2 PKN1 PKN1 DCAF1 DCAF1 NCOA1 NCOA1 PRPF6 PRPF6 ARID5A ARID5A NSD1 NSD1 NR4A1 NR4A1 FOXP1 FOXP1 LATS1 LATS1 MED12 MED12 LOC100622504 LOC100622504 NCOA2 NCOA2 ZBTB7A ZBTB7A ACTN4 ACTN4 TRIP4 TRIP4 NR4A2 NR4A2 MED4 MED4 PRKCB PRKCB KDM3A KDM3A LCOR LCOR MED30 MED30 TACC1 TACC1 SMARCD3 SMARCD3 PRMT2 PRMT2 LEF1 LEF1 BCAS3 BCAS3 CRY1 CRY1 RARG RARG PPARGC1A PPARGC1A CTNNB1 CTNNB1 SMARCA4 SMARCA4 ESR1 ESR1 TAF7 TAF7 PADI2 PADI2 CNOT1 CNOT1 THRAP3 THRAP3 RNF6 RNF6 TAF10 TAF10 BRD8 BRD8 EP300 EP300 SNW1 SNW1 F1SDC8_PIG F1SDC8_PIG MED13 MED13 MED1 MED1 MED24 MED24 SMARCE1 SMARCE1 STAT5B STAT5B TRIM24 TRIM24 TRIM68 TRIM68 PPARGC1B PPARGC1B RNF14 RNF14 CALR CALR MED16 MED16 MYOD1 MYOD1 GTF2H1 GTF2H1 CRY2 CRY2 NR1H3 NR1H3 NR0B1 NR0B1 NR1I2 NR1I2 TADA3 TADA3 TMF1 TMF1 CTBP2 CTBP2 TCF7L2 TCF7L2 MMS19 MMS19 SIRT1 SIRT1 YWHAH YWHAH PPID PPID
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CCDC62Coiled-coil domain containing 62. (692 aa)
SLC30A9Uncharacterized protein. (541 aa)
STRNStriatin isoform X1. (809 aa)
BUD31Protein BUD31 homolog isoform X2. (144 aa)
NCOA3Uncharacterized protein. (1296 aa)
NCOA6Nuclear receptor coactivator 6. (2061 aa)
ASXL1ASXL transcriptional regulator 1. (1542 aa)
GTF2BGeneral transcription factor IIB. (337 aa)
LRIF1Ligand-dependent nuclear receptor-interacting factor 1 isoform X1. (762 aa)
DCAF13DDB1 and CUL4 associated factor 13. (444 aa)
FOXH1Forkhead box H1. (354 aa)
NCOA7Nuclear receptor coactivator 7. (968 aa)
KDM1ALysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (875 aa)
PARK7DJ-1 protein. (189 aa)
NR1H2Nuclear receptor subfamily 1 group H member 2. (458 aa)
MED25Mediator complex subunit 25. (794 aa)
DAXXDeath domain associated protein. (751 aa)
CRXCone-rod homeobox. (345 aa)
SMAD3Mothers against decapentaplegic homolog. (434 aa)
KDM5DLysine demethylase 5D. (1506 aa)
DNAAF4Dynein axonemal assembly factor 4. (531 aa)
RXRARetinoid X receptor alpha. (701 aa)
WIPI1Uncharacterized protein. (477 aa)
A0A5G2RAG6_PIGUncharacterized protein. (876 aa)
NR1H4Nuclear receptor subfamily 1 group H member 4. (509 aa)
TAF7LTATA-box binding protein associated factor 7 like. (468 aa)
GRIP1Glutamate receptor interacting protein 1. (1210 aa)
MED17Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (677 aa)
NRIP1Nuclear receptor-interacting protein 1 isoform X1. (1156 aa)
TACC2Uncharacterized protein. (2041 aa)
NR4A3Nuclear receptor subfamily 4 group A member 3 isoform b. (643 aa)
ZNF366Zinc finger protein 366. (740 aa)
NKX3-1Homeobox protein Nkx-3.1 isoform 1. (247 aa)
C1DUncharacterized protein. (141 aa)
ARID1AAT-rich interaction domain 1A. (2289 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (617 aa)
A0A287BJ29_PIGUncharacterized protein. (118 aa)
DDX54ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (879 aa)
TOB2Protein Tob2 isoform X1. (353 aa)
VDRVitamin D3 receptor; Nuclear receptor for calcitriol, the active form of vitamin D3 which mediates the action of this vitamin on cells (By similarity). Enters the nucleus upon vitamin D3 binding where it forms heterodimers with the retinoid X receptor/RXR (By similarity). The VDR-RXR heterodimers bind to specific response elements on DNA and activate the transcription of vitamin D3-responsive target genes (By similarity). Plays a central role in calcium homeostasis (By similarity). (520 aa)
LOC106506226TACC_C domain-containing protein. (378 aa)
TCF21Transcription factor 21. (179 aa)
PROX1Prospero homeobox 1. (737 aa)
TGFB1I1Transforming growth factor beta-1-induced transcript 1 protein; Functions as a molecular adapter coordinating multiple protein-protein interactions at the focal adhesion complex and in the nucleus. Links various intracellular signaling modules to plasma membrane receptors and regulates the Wnt and TGFB signaling pathways. (519 aa)
SRARPSteroid receptor associated and regulated protein. (170 aa)
HIF1AHypoxia-inducible factor 1-alpha isoform 1. (824 aa)
NRBF2Nuclear receptor binding factor 2. (288 aa)
PKN1Protein kinase N1. (956 aa)
DCAF1DDB1 and CUL4 associated factor 1. (1511 aa)
NCOA1Nuclear receptor coactivator 1; Nuclear receptor coactivator that directly binds nuclear receptors and stimulates the transcriptional activities in a hormone- dependent fashion. Involved in the coactivation of different nuclear receptors, such as for steroids (PGR, GR and ER), retinoids (RXRs), thyroid hormone (TRs) and prostanoids (PPARs). Also involved in coactivation mediated by STAT3, STAT5A, STAT5B and STAT6 transcription factors. Displays histone acetyltransferase activity toward H3 and H4; the relevance of such activity remains however unclear. Plays a central role in creating m [...] (1441 aa)
PRPF6Pre-mRNA processing factor 6. (1150 aa)
ARID5AAT-rich interaction domain 5A. (846 aa)
NSD1Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific isoform X1. (2701 aa)
NR4A1Nuclear receptor subfamily 4 group A member 1 isoform 2. (598 aa)
FOXP1Forkhead box P1. (692 aa)
LATS1Large tumor suppressor kinase 1. (1146 aa)
MED12Mediator complex subunit 12. (2187 aa)
LOC100622504Uncharacterized protein. (469 aa)
NCOA2Nuclear receptor coactivator. (1463 aa)
ZBTB7AZinc finger and BTB domain containing 7A. (596 aa)
ACTN4Actinin alpha 4. (1160 aa)
TRIP4Thyroid hormone receptor interactor 4. (649 aa)
NR4A2Nuclear receptor subfamily 4 group A member 2 isoform X1. (609 aa)
MED4Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (271 aa)
PRKCBProtein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (673 aa)
KDM3ALysine demethylase 3A. (1323 aa)
LCORLigand dependent nuclear receptor corepressor. (1695 aa)
MED30Mediator of RNA polymerase II transcription subunit 30 isoform 1. (185 aa)
TACC1TACC_C domain-containing protein. (801 aa)
SMARCD3SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3. (548 aa)
PRMT2Protein arginine methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (435 aa)
LEF1Lymphoid enhancer binding factor 1. (429 aa)
BCAS3BCAS3 microtubule associated cell migration factor. (950 aa)
CRY1Cryptochrome circadian regulator 1. (588 aa)
RARGRetinoic acid receptor gamma. (554 aa)
PPARGC1APeroxisome proliferator-activated receptor gamma coactivator 1-alpha; Transcriptional coactivator for steroid receptors and nuclear receptors. Greatly increases the transcriptional activity of PPARG and thyroid hormone receptor on the uncoupling protein promoter. Can regulate key mitochondrial genes that contribute to the program of adaptive thermogenesis. Plays an essential role in metabolic reprogramming in response to dietary availability through coordination of the expression of a wide array of genes involved in glucose and fatty acid metabolism. Induces the expression of PERM1 in [...] (796 aa)
CTNNB1Catenin beta 1. (808 aa)
SMARCA4SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4. (1647 aa)
ESR1Estrogen receptor; Nuclear hormone receptor. The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. Ligand-dependent nuclear transactivation involves either direct homodimer binding to a palindromic estrogen response element (ERE) sequence or association with other DNA-binding transcription factors, such as AP-1/c-Jun, c-Fos, ATF-2, Sp1 and Sp3, to mediate ERE- independent signaling. Ligand binding induces a conformational change allowing subsequent or combinatorial a [...] (595 aa)
TAF7Transcription initiation factor TFIID subunit 7. (349 aa)
PADI2Peptidyl arginine deiminase 2. (689 aa)
CNOT1CCR4-NOT transcription complex subunit 1. (2343 aa)
THRAP3Thyroid hormone receptor-associated protein 3 isoform 1. (958 aa)
RNF6Ring finger protein 6. (663 aa)
TAF10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (217 aa)
BRD8Bromodomain containing 8. (1236 aa)
EP300E1A binding protein p300. (2420 aa)
SNW1SNW domain-containing protein 1 isoform 2. (536 aa)
F1SDC8_PIGUncharacterized protein. (1369 aa)
MED13Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (2173 aa)
MED1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1517 aa)
MED24Mediator complex subunit 24. (1007 aa)
SMARCE1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1. (411 aa)
STAT5BSignal transducer and activator of transcription 5B; Carries out a dual function: signal transduction and activation of transcription. Mediates cellular responses to the cytokine KITLG/SCF and other growth factors. Binds to the GAS element and activates PRL-induced transcription. Positively regulates hematopoietic/erythroid differentiation. (787 aa)
TRIM24Transcription intermediary factor 1-alpha isoform X1. (1050 aa)
TRIM68Tripartite motif containing 68. (484 aa)
PPARGC1BPeroxisome proliferator-activated receptor gamma coactivator 1-beta isoform 1. (1028 aa)
RNF14RBR-type E3 ubiquitin transferase. (474 aa)
CALRCalreticulin; Calcium-binding chaperone that promotes folding, oligomeric assembly and quality control in the endoplasmic reticulum (ER) via the calreticulin/calnexin cycle. This lectin interacts transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER. Interacts with the DNA-binding domain of NR3C1 and mediates its nuclear export (By similarity). Involved in maternal gene expression regulation. May participate in oocyte maturation via the regulation of calcium homeostasis; Belongs to the calreticulin family. (417 aa)
MED16Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (837 aa)
MYOD1Myoblast determination protein 1; Acts as a transcriptional activator that promotes transcription of muscle-specific target genes and plays a role in muscle differentiation. Together with MYF5 and MYOG, co-occupies muscle-specific gene promoter core region during myogenesis. Induces fibroblasts to differentiate into myoblasts. Interacts with and is inhibited by the twist protein. This interaction probably involves the basic domains of both proteins (By similarity). (319 aa)
GTF2H1General transcription factor IIH subunit 1. (674 aa)
CRY2Cryptochrome circadian regulator 2. (615 aa)
NR1H3Nuclear receptor subfamily 1 group H member 3. (470 aa)
NR0B1Nuclear receptor subfamily 0 group B member 1; Orphan nuclear receptor. Component of a cascade required for the development of the hypothalamic-pituitary-adrenal-gonadal axis. Acts as a coregulatory protein that inhibits the transcriptional activity of other nuclear receptors through heterodimeric interactions. May also have a role in the development of the embryo and in the maintenance of embryonic stem cell pluripotency (By similarity). Belongs to the nuclear hormone receptor family. NR0 subfamily. (490 aa)
NR1I2Nuclear receptor subfamily 1 group I member 2. (437 aa)
TADA3Transcriptional adapter 3 isoform a. (432 aa)
TMF1TATA element modulatory factor 1. (1096 aa)
CTBP2C-terminal binding protein 2. (982 aa)
TCF7L2Transcription factor 7 like 2. (669 aa)
MMS19MMS19 homolog, cytosolic iron-sulfur assembly component. (1039 aa)
SIRT1NAD-dependent protein deacetylase sirtuin-1 isoform a. (742 aa)
YWHAHTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta; Belongs to the 14-3-3 family. (246 aa)
PPIDPeptidylprolyl isomerase D. (370 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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