(7 nodes) Autophagy protein Atg8 ubiquitin-like network (Sus scrofa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GABARAPL1	Uncharacterized protein. (148 aa)
	GABARAPL2	Uncharacterized protein. (187 aa)
	MAP1LC3B	Microtubule-associated protein 1 light chain 3 beta. (125 aa)
	GABARAP	Uncharacterized protein. (98 aa)
	MAP1LC3A	Microtubule-associated protein 1 light chain 3 alpha. (121 aa)
	MAP1LC3C	Microtubule associated protein 1 light chain 3 gamma. (147 aa)
	A0A287AMX4_PIG	Uncharacterized protein. (121 aa)

Your Current Organism:

Sus scrofa

NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A287AMX4_PIG	MAP1LC3A	ENSSSCP00000045273	ENSSSCP00000007753	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 alpha.	0.588
GABARAP	GABARAPL1	ENSSSCP00000020071	ENSSSCP00000000681	Uncharacterized protein.	Uncharacterized protein.	0.902
GABARAP	GABARAPL2	ENSSSCP00000020071	ENSSSCP00000065335	Uncharacterized protein.	Uncharacterized protein.	0.922
GABARAP	MAP1LC3A	ENSSSCP00000020071	ENSSSCP00000007753	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 alpha.	0.718
GABARAP	MAP1LC3B	ENSSSCP00000020071	ENSSSCP00000002867	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 beta.	0.706
GABARAP	MAP1LC3C	ENSSSCP00000020071	ENSSSCP00000041124	Uncharacterized protein.	Microtubule associated protein 1 light chain 3 gamma.	0.530
GABARAPL1	GABARAP	ENSSSCP00000000681	ENSSSCP00000020071	Uncharacterized protein.	Uncharacterized protein.	0.902
GABARAPL1	GABARAPL2	ENSSSCP00000000681	ENSSSCP00000065335	Uncharacterized protein.	Uncharacterized protein.	0.925
GABARAPL1	MAP1LC3A	ENSSSCP00000000681	ENSSSCP00000007753	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 alpha.	0.714
GABARAPL1	MAP1LC3B	ENSSSCP00000000681	ENSSSCP00000002867	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 beta.	0.713
GABARAPL1	MAP1LC3C	ENSSSCP00000000681	ENSSSCP00000041124	Uncharacterized protein.	Microtubule associated protein 1 light chain 3 gamma.	0.539
GABARAPL2	GABARAP	ENSSSCP00000065335	ENSSSCP00000020071	Uncharacterized protein.	Uncharacterized protein.	0.922
GABARAPL2	GABARAPL1	ENSSSCP00000065335	ENSSSCP00000000681	Uncharacterized protein.	Uncharacterized protein.	0.925
GABARAPL2	MAP1LC3A	ENSSSCP00000065335	ENSSSCP00000007753	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 alpha.	0.859
GABARAPL2	MAP1LC3B	ENSSSCP00000065335	ENSSSCP00000002867	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 beta.	0.922
GABARAPL2	MAP1LC3C	ENSSSCP00000065335	ENSSSCP00000041124	Uncharacterized protein.	Microtubule associated protein 1 light chain 3 gamma.	0.554
MAP1LC3A	A0A287AMX4_PIG	ENSSSCP00000007753	ENSSSCP00000045273	Microtubule-associated protein 1 light chain 3 alpha.	Uncharacterized protein.	0.588
MAP1LC3A	GABARAP	ENSSSCP00000007753	ENSSSCP00000020071	Microtubule-associated protein 1 light chain 3 alpha.	Uncharacterized protein.	0.718
MAP1LC3A	GABARAPL1	ENSSSCP00000007753	ENSSSCP00000000681	Microtubule-associated protein 1 light chain 3 alpha.	Uncharacterized protein.	0.714
MAP1LC3A	GABARAPL2	ENSSSCP00000007753	ENSSSCP00000065335	Microtubule-associated protein 1 light chain 3 alpha.	Uncharacterized protein.	0.859