STRINGSTRING
TUT7 TUT7 TUT4 TUT4 CNOT11 CNOT11 CNOT6L CNOT6L PAN3 PAN3 EIF4A2 EIF4A2 EIF4A3 EIF4A3 CNOT1 CNOT1 EIF4A1 EIF4A1 PABPC1 PABPC1 EIF4E EIF4E CNOT7 CNOT7 PAN2 PAN2 CNOT3 CNOT3 PAIP1 PAIP1 EIF4B EIF4B CNOT2 CNOT2 CNOT4 CNOT4 EIF4G1 EIF4G1 CNOT6 CNOT6 CNOT8 CNOT8 PARN PARN CNOT10 CNOT10 CNOT9 CNOT9
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TUT7Terminal uridylyl transferase 7. (1544 aa)
TUT4Terminal uridylyl transferase 4. (1669 aa)
CNOT11CCR4-NOT transcription complex subunit 11. (512 aa)
CNOT6LCCR4-NOT transcription complex subunit 6 like. (651 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (906 aa)
EIF4A2Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (410 aa)
EIF4A3Eukaryotic initiation factor 4A-III, N-terminally processed; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expr [...] (488 aa)
CNOT1CCR4-NOT transcription complex subunit 1. (2343 aa)
EIF4A1Eukaryotic translation initiation factor 4A isoform 1; Belongs to the DEAD box helicase family. (406 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
EIF4EEukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (237 aa)
CNOT7CCR4-NOT transcription complex subunit 7 isoform 1. (285 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1198 aa)
CNOT3CCR4-NOT transcription complex subunit 3. (774 aa)
PAIP1Poly(A) binding protein interacting protein 1. (480 aa)
EIF4BEukaryotic translation initiation factor 4B isoform 1. (615 aa)
CNOT2NOT2_3_5 domain-containing protein. (578 aa)
CNOT4CCR4-NOT transcription complex subunit 4. (710 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1. (1613 aa)
CNOT6CCR4-NOT transcription complex subunit 6. (590 aa)
CNOT8CCR4-NOT transcription complex subunit 8. (312 aa)
PARNPoly(A)-specific ribonuclease. (715 aa)
CNOT10CCR4-NOT transcription complex subunit 10. (803 aa)
CNOT9CCR4-NOT transcription complex subunit 9. (300 aa)
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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