A0A1Y2WVB4 protein (Daldinia sp. EC12) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2WVB4

Glycosyltransferase family 8 protein. (340 aa)

Predicted Functional Partners:

A0A1Y2X496

0.942

A0A1Y2XAG2

0.855

A0A1Y2WY18

0.851

A0A1Y2X4V1

0.842

A0A1Y2X8K5

0.809

A0A1Y2WV97

0.800

A0A1Y2X147

0.769

A0A1Y2WVP6

0.768

A0A1Y2X023

0.708

A0A1Y2X771

0.653

Your Current Organism:

Daldinia sp. EC12

NCBI taxonomy Id: 1001832
Other names: D. sp. EC12

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2WV97	A0A1Y2WVB4	Glycoside hydrolase family 13 protein.	Glycosyltransferase family 8 protein.	0.800
A0A1Y2WV97	A0A1Y2X147	Glycoside hydrolase family 13 protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.991
A0A1Y2WV97	A0A1Y2X496	Glycoside hydrolase family 13 protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.928
A0A1Y2WV97	A0A1Y2X4V1	Glycoside hydrolase family 13 protein.	Glycoside hydrolase family 13 protein.	0.972
A0A1Y2WV97	A0A1Y2X8K5	Glycoside hydrolase family 13 protein.	Uncharacterized protein.	0.781
A0A1Y2WVB4	A0A1Y2WV97	Glycosyltransferase family 8 protein.	Glycoside hydrolase family 13 protein.	0.800
A0A1Y2WVB4	A0A1Y2WVP6	Glycosyltransferase family 8 protein.	Carbohydrate-binding module family 21 protein.	0.768
A0A1Y2WVB4	A0A1Y2WY18	Glycosyltransferase family 8 protein.	DNA polymerase.	0.851
A0A1Y2WVB4	A0A1Y2X023	Glycosyltransferase family 8 protein.	DNA polymerase.	0.708
A0A1Y2WVB4	A0A1Y2X147	Glycosyltransferase family 8 protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.769
A0A1Y2WVB4	A0A1Y2X496	Glycosyltransferase family 8 protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.942
A0A1Y2WVB4	A0A1Y2X4V1	Glycosyltransferase family 8 protein.	Glycoside hydrolase family 13 protein.	0.842
A0A1Y2WVB4	A0A1Y2X771	Glycosyltransferase family 8 protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.653
A0A1Y2WVB4	A0A1Y2X8K5	Glycosyltransferase family 8 protein.	Uncharacterized protein.	0.809
A0A1Y2WVB4	A0A1Y2XAG2	Glycosyltransferase family 8 protein.	Uncharacterized protein.	0.855
A0A1Y2WVP6	A0A1Y2WVB4	Carbohydrate-binding module family 21 protein.	Glycosyltransferase family 8 protein.	0.768
A0A1Y2WVP6	A0A1Y2X147	Carbohydrate-binding module family 21 protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.576
A0A1Y2WVP6	A0A1Y2X496	Carbohydrate-binding module family 21 protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.983
A0A1Y2WY18	A0A1Y2WVB4	DNA polymerase.	Glycosyltransferase family 8 protein.	0.851
A0A1Y2WY18	A0A1Y2X023	DNA polymerase.	DNA polymerase.	0.855