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rbsA1 protein (Streptomyces coelicolor) - STRING interaction network
"rbsA1" - Ribose import ATP-binding protein RbsA 1 in Streptomyces coelicolor
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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rbsA1Ribose import ATP-binding protein RbsA 1; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family (505 aa)    
Predicted Functional Partners:
SCO0810
SCF43.21c. possible ABC transporter permease, len- 346 aa. Similar to many permeases e.g. Bacillus subtilis SW-RBSC_BACSU(EMBL-Z25798) ribose transport system permease RbsC (323 aa), fasta scores opt- 591 z-score- 644.0 E()- 1.7e-28 33.4% identity in 302 aa overlap and Escherichia coli SW-RBSC_ECOLI(EMBL-L10328) ribose transport system permease RbsC (321 aa), fasta scores opt- 596 z-score- 649.4 E()- 8.6e-29 34.5% identity in 304 aa overlap. Also similar to the adjoining CDS, SCF43.20c, possible ABC transporter permease (346 aa), fasta scores opt- 545 z-score- 528.3 E()- 5e-24 33.4% id [...] (346 aa)
 
  0.994
SCO0809
SCF43.20c. possible ABC transporter permease, len- 337 aa. Similar to many permeases e.g. Bacillus subtilis SW-RBSC_BACSU(EMBL-Z25798) ribose transport system permease RbsC (323 aa), fasta scores opt- 561 z-score- 603.2 E()- 3.3e-26 33.9% identity in 295 aa overlap. Also similar to the adjoining CDS, SCF43.21c, possible ABC transporter permease (346 aa), fasta scores opt- 545 z-score- 528.3 E()- 5e-24 33.4% identity in 335 aa overlap. Contains multiple possible membrane spanning hydrophobic domains (337 aa)
 
  0.994
SCO0808
SCF43.19c, possible solute-binding lipoprotein, len- 360 aa. Similar to many bacterial extracellular solute-binding proteins including- Bacillus subtilis SW-RBSB_BACSU(EMBL-Z92953) D-ribose-binding protein precursor, RbsB (305 aa), fasta scores opt- 234 z-score- 252.1 E()- 1.2e-06 24.9% identity in 277 aa overlap and Streptomyces coelicolor TR-CAB56679(EMBL-AL121596) possible solute-binding lipoprotein SCF51A.27 (359 aa), fasta scores opt- 1487 z-score- 1547.8 E()- 0 63.1% identity in 360 aa overlap. Contains an appropriately positioned Prosite hit to PS00013 Prokaryotic membrane lip [...] (360 aa)
 
  0.972
SCO6568
SC3F9.03, ABC transporter integral membrane protein, len- 339 aa; similar to many involved in sugar transport e.g. RBSC_BACSU ribose transport system permease (323 aa), fasta scores; opt- 700 z-score- 958.9 E()- 0, 39.5%identity in 314 aa overlap (339 aa)
   
  0.831
SCO2747
SCC57A.18, bifunctional carbohydrate binding and transport protein, len- 613 aa. The N-terminus is highly similar to many ribose transport system permeases e.g. Escherichia coli SW-RBSC_ECOLI(EMBL-L10328) ribose transport system permease RbsC (321 aa), fasta scores opt- 846 z-score- 833.8 E()- 0 47.1% identity in 310 aa overlap. The C-terminus is highly similar to many ribose-binding proteins e.g. Escherichia coli SW-RBSB_ECOLI(EMBL-K00511) D-ribose-binding periplasmic protein precursor (296 aa), fasta scores opt- 863 z-score- 847.0 E()-0 46.9% identity in 303 aa overlap. Contains a Pf [...] (651 aa)
 
  0.825
SCO6011
SC7B7.08, probable ABC-type trans- membrane transport protein, len- 430 aa; similar to many others of the ARAH/RBSC subfamily of the binding-protein dependent transport systems eg. XYLH_ECOLI P37389 xylose transport permease xylH (393 aa), fasta scores; opt- 695 z-score- 690.3 E()- 2.7e-31, 34.2% identity in 377 aa overlap. Possible alternative start site 33 aa downstream (430 aa)
   
  0.788
SCO2406
SC4A7.34, probable sugar transport permease, len- 414 aa; similar to TR-AAD45714 (EMBL-AF160811) Bacillus stearothermophilus L-arabinose membrane permease AraH, 407 aa; fasta scores- opt- 1448 z-score- 1515.1 E()- 0; 56.9% identity in 385 aa overlap and to SW-XYLH_HAEIN (EMBL-U32791) Haemophilus influenzae xylose transport permease XylH, 375 aa; fasta scores- opt- 970 z-score- 1017.9 E()- 0; 42.6% identity in 376 aa overlap (414 aa)
   
  0.769
SCO0449
SCF51A.27, possible solute-binding lipoprotein , len- 359 aa. Weakly similar to many solute-binding proteins e.g. Streptomyces coelicolor TR-O69944 (EMBL; AL023862) solute binding protein SC3F9.04 (348 aa), fasta scores opt- 231 z-score- 259.4 E()- 4.3e-07 23.2% identity in 366 aa overlap. Contains a possible N-terminal signal sequence and an appropriately positioned Prosite hit to, PS00013, a prokaryotic membrane lipoprotein lipid attachment site (359 aa)
 
 
  0.722
SCO3667
SCH44.07c, probable solute-binding protein, len- 372 aa; similar to TR-O50503 (EMBL-AL009199) Streptomyces coelicolor possible solute-binding protein SC7B7.06, 371 aa; fasta scores- opt- 1441 z-score- 1539.7 E()- 0; 60.6% identity in 376 aa overlap and to SW-XYLF_ECOLI (EMBL-U00039) Escherichia coli D-xylose-binding periplasmic protein precursor XylF, 330 aa; fasta scores- opt- 559 z-score- 602.9 E()- 4.1e-26; 34.3% identity in 318 aa overlap. Contains Pfam match to entry PF00532 Peripla_BP_like, Periplasmic binding proteins and sugar binding domain of the LacI family and correctly si [...] (372 aa)
 
   
  0.707
SCO6009
SC7B7.06, probable solute-binding protein of transmembrane transport system, len- 403 aa; similar to many eg. XYLF_ECOLI P37387 d-xylose-binding periplasmic protein precursor (330 aa), fasta scores; opt- 619 z-score- 573.4 E()- 8.9e-25, 35.7% identity in 325 aa overlap. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site (371 aa)
 
   
  0.685
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor, Streptomyces coelicolor A3(2)
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