STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCO0979Hypothetical protein; SCBAC19F3.06c, doubtful CDS, len: 78aa: no significant database matches. (78 aa)    
Predicted Functional Partners:
SCO0980
Hypothetical protein (fragment); SCBAC19F3.07, partial CDS, len: 119aa: similar to N-terminus of many eg. SW:P49851 (YKHA_BACSU) putative acyl-CoA thioester hydrolase from Bacillus subtilis (179 aa) fasta scores; opt: 240, Z-score: 251.9, 39.815% identity (40.187% ungapped) in 108 aa overlap.
       0.473
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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