Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCO0979 | SCO0980 | gene:17758562 | gene:17758563 | Hypothetical protein; SCBAC19F3.06c, doubtful CDS, len: 78aa: no significant database matches. | Hypothetical protein (fragment); SCBAC19F3.07, partial CDS, len: 119aa: similar to N-terminus of many eg. SW:P49851 (YKHA_BACSU) putative acyl-CoA thioester hydrolase from Bacillus subtilis (179 aa) fasta scores; opt: 240, Z-score: 251.9, 39.815% identity (40.187% ungapped) in 108 aa overlap. | 0.473 |
SCO0980 | SCO0979 | gene:17758563 | gene:17758562 | Hypothetical protein (fragment); SCBAC19F3.07, partial CDS, len: 119aa: similar to N-terminus of many eg. SW:P49851 (YKHA_BACSU) putative acyl-CoA thioester hydrolase from Bacillus subtilis (179 aa) fasta scores; opt: 240, Z-score: 251.9, 39.815% identity (40.187% ungapped) in 108 aa overlap. | Hypothetical protein; SCBAC19F3.06c, doubtful CDS, len: 78aa: no significant database matches. | 0.473 |