Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCO1801 | SCO1802 | gene:17759398 | gene:17759399 | SCI5.09c, possible two component response regulator, len: 210aa; similar to many eg. TR:CAB42027 (EMBL:AL049754) putative two component response regulator from Streptomyces coelicolor (228 aa) fasta scores; opt: 622, z-score: 715.0, E(): 1.7e-32, (48.6% identity in 214 aa overlap) and SW:NARL_ECOLI nitrite/nitrate response regulator from Escherichia coli (216 aa) fasta scores; opt: 512, z-score: 591.0, E(): 1.4e-25, (39.9% identity in 203 aa overlap). Contains Pfam matches to PF00196 Bacterial regulatory proteins, luxR family and PF00072 Response regulator receiver domain, and Prosite [...] | SCI33.01c, possible two-component system sensor kinase (fragment), len: >383 aa; similar to N-terminal region of TR:Q9L1F1 (EMBL:AL157916) Streptomyces coelicolor putative two-component system sensor kinase SC3D11.11, 442 aa; fasta scores: opt: 406 z-score: 434.9 E(): 1.1e-16; 38.9% identity in 211 aa overlap. Contains Pfam matches to entries PF01590 GAF, GAF domain and PF02518 HATPase_c, GAF domain; SCI5.10c, partial CDS, possible two component sensor kinase, len: >41aa; similar to the C-terminus of many egs. TR:Q52558 (EMBL:U02041) VsrA, virulence regulator from Ralstonia solanacearu [...] | 0.971 |
| SCO1801 | SCO2705 | gene:17759398 | gene:17760312 | SCI5.09c, possible two component response regulator, len: 210aa; similar to many eg. TR:CAB42027 (EMBL:AL049754) putative two component response regulator from Streptomyces coelicolor (228 aa) fasta scores; opt: 622, z-score: 715.0, E(): 1.7e-32, (48.6% identity in 214 aa overlap) and SW:NARL_ECOLI nitrite/nitrate response regulator from Escherichia coli (216 aa) fasta scores; opt: 512, z-score: 591.0, E(): 1.4e-25, (39.9% identity in 203 aa overlap). Contains Pfam matches to PF00196 Bacterial regulatory proteins, luxR family and PF00072 Response regulator receiver domain, and Prosite [...] | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | 0.560 |
| SCO1802 | SCO1801 | gene:17759399 | gene:17759398 | SCI33.01c, possible two-component system sensor kinase (fragment), len: >383 aa; similar to N-terminal region of TR:Q9L1F1 (EMBL:AL157916) Streptomyces coelicolor putative two-component system sensor kinase SC3D11.11, 442 aa; fasta scores: opt: 406 z-score: 434.9 E(): 1.1e-16; 38.9% identity in 211 aa overlap. Contains Pfam matches to entries PF01590 GAF, GAF domain and PF02518 HATPase_c, GAF domain; SCI5.10c, partial CDS, possible two component sensor kinase, len: >41aa; similar to the C-terminus of many egs. TR:Q52558 (EMBL:U02041) VsrA, virulence regulator from Ralstonia solanacearu [...] | SCI5.09c, possible two component response regulator, len: 210aa; similar to many eg. TR:CAB42027 (EMBL:AL049754) putative two component response regulator from Streptomyces coelicolor (228 aa) fasta scores; opt: 622, z-score: 715.0, E(): 1.7e-32, (48.6% identity in 214 aa overlap) and SW:NARL_ECOLI nitrite/nitrate response regulator from Escherichia coli (216 aa) fasta scores; opt: 512, z-score: 591.0, E(): 1.4e-25, (39.9% identity in 203 aa overlap). Contains Pfam matches to PF00196 Bacterial regulatory proteins, luxR family and PF00072 Response regulator receiver domain, and Prosite [...] | 0.971 |
| SCO1802 | SCO2705 | gene:17759399 | gene:17760312 | SCI33.01c, possible two-component system sensor kinase (fragment), len: >383 aa; similar to N-terminal region of TR:Q9L1F1 (EMBL:AL157916) Streptomyces coelicolor putative two-component system sensor kinase SC3D11.11, 442 aa; fasta scores: opt: 406 z-score: 434.9 E(): 1.1e-16; 38.9% identity in 211 aa overlap. Contains Pfam matches to entries PF01590 GAF, GAF domain and PF02518 HATPase_c, GAF domain; SCI5.10c, partial CDS, possible two component sensor kinase, len: >41aa; similar to the C-terminus of many egs. TR:Q52558 (EMBL:U02041) VsrA, virulence regulator from Ralstonia solanacearu [...] | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | 0.560 |
| SCO2704 | SCO2705 | gene:17760311 | gene:17760312 | SCC61A.25c, possible secreted protein, len: 244aa; contains a possible cleavable N-terminal signal sequence. | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | 0.732 |
| SCO2704 | SCO2706 | gene:17760311 | gene:17760313 | SCC61A.25c, possible secreted protein, len: 244aa; contains a possible cleavable N-terminal signal sequence. | SCC61A.27, possible transferase, len: 436 aa; similar to many proposed to be involved in LPS biosynthesis e.g. SW:LPSB_RHIME (EMBL:AF193023) LpsB from lipopolysaccharide biosynthesis cluster of Rhizobium meliloti. Contains Pfam match to entry PF00534 Glycos_transf_1, Glycosyl transferases group 1. Also contains a TTA encoded leucine close to the N-terminus, possible target for bldA regulation. | 0.673 |
| SCO2704 | SCO2707 | gene:17760311 | gene:17760314 | SCC61A.25c, possible secreted protein, len: 244aa; contains a possible cleavable N-terminal signal sequence. | SCC61A.28, possible transferase (membrane-associated), len: 484 aa; similar to many proposed to be involved in LPS biosynthesis e.g. SW:P71241 (WCAJ_ECOLI) putative colanic biosynthesis UDP-glucose lipid carrier transferase from Escherichia coli (464 aa) fasta scores; opt: 493, z-score: 540.1, E(): 1.3e-22, 30.9% identity in 376 aa overlap. Contains possible membrane-spanning hydrophobic regions. | 0.673 |
| SCO2704 | SCO2708 | gene:17760311 | gene:17760315 | SCC61A.25c, possible secreted protein, len: 244aa; contains a possible cleavable N-terminal signal sequence. | SCC61A.29, possible integral membrane protein, len: 438aa; weakly similar to TR:Q51524 (EMBL:X83916) PilO, required for glycosylation of Pseudomonas aeruginosa 1244 pilin (461 aa) fasta scores; opt: 165, z-score: 184.2, E(): 0.0085, 25.7% identity in 439 aa overlap. | 0.433 |
| SCO2704 | SCO2709 | gene:17760311 | gene:17760316 | SCC61A.25c, possible secreted protein, len: 244aa; contains a possible cleavable N-terminal signal sequence. | SCC61A.30, possible integral membrane protein, len: 523aa; similar to many proposed virulence factors eg. SW:P37169 (MVIN_SALTY) virulence factor MviN from Salmonella typhimurium (524 aa) fasta scores; opt: 475, z-score: 495.1, E(): 4e-20, 28.8% identity in 423 aa overlap. Contains possible hydrophobic membrane spanning regions. | 0.578 |
| SCO2704 | SCO2711 | gene:17760311 | gene:17760318 | SCC61A.25c, possible secreted protein, len: 244aa; contains a possible cleavable N-terminal signal sequence. | SCC61A.32, possible glycosyl transferase, len: 400 aa; weakly similar to others proposed to be involved in LPS biosynthesis e.g. TR:AAF23993 (EMBL:AF035937) from Pseudomonas aeruginosa (383 aa) fasta scores; opt: 381, z-score: 364.0, E(): 8.2e-13, 28.6% identity in 392 aa overlap. Contains Pfam match to entry PF00534 Glycos_transf_1, Glycosyl transferases group 1. | 0.413 |
| SCO2705 | SCO1801 | gene:17760312 | gene:17759398 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCI5.09c, possible two component response regulator, len: 210aa; similar to many eg. TR:CAB42027 (EMBL:AL049754) putative two component response regulator from Streptomyces coelicolor (228 aa) fasta scores; opt: 622, z-score: 715.0, E(): 1.7e-32, (48.6% identity in 214 aa overlap) and SW:NARL_ECOLI nitrite/nitrate response regulator from Escherichia coli (216 aa) fasta scores; opt: 512, z-score: 591.0, E(): 1.4e-25, (39.9% identity in 203 aa overlap). Contains Pfam matches to PF00196 Bacterial regulatory proteins, luxR family and PF00072 Response regulator receiver domain, and Prosite [...] | 0.560 |
| SCO2705 | SCO1802 | gene:17760312 | gene:17759399 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCI33.01c, possible two-component system sensor kinase (fragment), len: >383 aa; similar to N-terminal region of TR:Q9L1F1 (EMBL:AL157916) Streptomyces coelicolor putative two-component system sensor kinase SC3D11.11, 442 aa; fasta scores: opt: 406 z-score: 434.9 E(): 1.1e-16; 38.9% identity in 211 aa overlap. Contains Pfam matches to entries PF01590 GAF, GAF domain and PF02518 HATPase_c, GAF domain; SCI5.10c, partial CDS, possible two component sensor kinase, len: >41aa; similar to the C-terminus of many egs. TR:Q52558 (EMBL:U02041) VsrA, virulence regulator from Ralstonia solanacearu [...] | 0.560 |
| SCO2705 | SCO2704 | gene:17760312 | gene:17760311 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCC61A.25c, possible secreted protein, len: 244aa; contains a possible cleavable N-terminal signal sequence. | 0.732 |
| SCO2705 | SCO2706 | gene:17760312 | gene:17760313 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCC61A.27, possible transferase, len: 436 aa; similar to many proposed to be involved in LPS biosynthesis e.g. SW:LPSB_RHIME (EMBL:AF193023) LpsB from lipopolysaccharide biosynthesis cluster of Rhizobium meliloti. Contains Pfam match to entry PF00534 Glycos_transf_1, Glycosyl transferases group 1. Also contains a TTA encoded leucine close to the N-terminus, possible target for bldA regulation. | 0.763 |
| SCO2705 | SCO2707 | gene:17760312 | gene:17760314 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCC61A.28, possible transferase (membrane-associated), len: 484 aa; similar to many proposed to be involved in LPS biosynthesis e.g. SW:P71241 (WCAJ_ECOLI) putative colanic biosynthesis UDP-glucose lipid carrier transferase from Escherichia coli (464 aa) fasta scores; opt: 493, z-score: 540.1, E(): 1.3e-22, 30.9% identity in 376 aa overlap. Contains possible membrane-spanning hydrophobic regions. | 0.767 |
| SCO2705 | SCO2708 | gene:17760312 | gene:17760315 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCC61A.29, possible integral membrane protein, len: 438aa; weakly similar to TR:Q51524 (EMBL:X83916) PilO, required for glycosylation of Pseudomonas aeruginosa 1244 pilin (461 aa) fasta scores; opt: 165, z-score: 184.2, E(): 0.0085, 25.7% identity in 439 aa overlap. | 0.556 |
| SCO2705 | SCO2709 | gene:17760312 | gene:17760316 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCC61A.30, possible integral membrane protein, len: 523aa; similar to many proposed virulence factors eg. SW:P37169 (MVIN_SALTY) virulence factor MviN from Salmonella typhimurium (524 aa) fasta scores; opt: 475, z-score: 495.1, E(): 4e-20, 28.8% identity in 423 aa overlap. Contains possible hydrophobic membrane spanning regions. | 0.615 |
| SCO2705 | SCO2711 | gene:17760312 | gene:17760318 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SCC61A.32, possible glycosyl transferase, len: 400 aa; weakly similar to others proposed to be involved in LPS biosynthesis e.g. TR:AAF23993 (EMBL:AF035937) from Pseudomonas aeruginosa (383 aa) fasta scores; opt: 381, z-score: 364.0, E(): 8.2e-13, 28.6% identity in 392 aa overlap. Contains Pfam match to entry PF00534 Glycos_transf_1, Glycosyl transferases group 1. | 0.546 |
| SCO2705 | SCO2718 | gene:17760312 | gene:17760325 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | Putative secreted protein; Probably forms part of the rodlet layer on the spore surface; despite their high similarity both RdlA and RdlB are required for rodlet formation. Plays a role in cell adhesion to polystyrene plates. Does not form amyloid fibrils in vitro, unlike RdlB. Belongs to the rodlin family. | 0.550 |
| SCO2705 | SCO7637 | gene:17760312 | gene:17765297 | Putative membrane protein; One of 8 partially redundant surface-active proteins required for efficient formation of aerial mycelium; the short chaplins assemble into a hydrophobic, amyloidal fibrillar surface layer that envelopes and protects aerial hyphae and spores, presumably anchored to the long chaplins. Chaplins have an overlapping function with the surface-active SapB peptide; chaplins are essential on minimal medium while on rich medium both chaplins and SapB are required for efficient aerial hyphae formation. Chaplins are also involved in cell attachment to a hydrophobic surfa [...] | SC10F4.10c, secreted endoglucanase, len: 486 aa; highly similar to SW:GUNA_STRLI (EMBL:M82807) Streptomyces lividans endoglucanase CelA precursor (EC 3.2.1.4) CelA, 459 aa; fasta scores: opt: 2977 z-score: 3136.1 E(): 0; 97.4% identity in 461 aa overlap. Contains Pfam matches to entries PF00553 CBD_2, Cellulose binding domain and PF00150 cellulase, Cellulase (glycosyl hydrolase family 5) and matches to Prosite entries PS00561 Cellulose-binding domain, bacterial type and PS00659 Glycosyl hydrolases family 5 signature. Also contains possible N-terminal region signal peptide sequence. | 0.689 |
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