STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCO4226Hypothetical protein; 2SCD46.40c, unknown, len: 82aa. (82 aa)    
Predicted Functional Partners:
SCO4227
Hypothetical protein; 2SCD46.41c, unknown, len: 421aa.
       0.769
SCO4228
Putative phosphate transport system regulator; Plays a role in the regulation of phosphate uptake.
       0.606
SCO6530
Hypothetical protein SC5C7.15; SC5C7.15, unknown, len: 610 aa; contains Gln- and Lys-rich N-terminus.
  
     0.506
SCO4225
2SCD46.39c, possible integral membrane protein, len: 130aa; contains possible membrane-spanning hydrophobic regions.
       0.498
SCO1659
Putative glycerol uptake facilitator protein; Glycerol enters the cell via the glycerol diffusion facilitator protein. This membrane protein facilitates the movement of glycerol across the cytoplasmic membrane (By similarity). Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.483
SCO2714
SCC61A.35, possible secreted protein, len: 395aa; contains a possible non-cleavable N-terminal signal sequence; Belongs to the glycosyl hydrolase 26 family.
  
     0.460
SCO0940
SCM10.28, possible marR-family regulatory protein, len: 157 aa; weakly similar to TR:O07458 (EMBL:U75363) Rhodopseudomonas palustris putative regulatory protein, 175 aa; fasta scores: opt: 150 z-score: 189.7 E(): 0.0036; 28.1% identity in 160 aa overlap. Contains Pfam match to entry PF01047 MarR, MarR family.
  
     0.457
SCO4128
SCD72A.14c, possible membrane protein, len: 513aa; similar to TR:Q9X871 (EMBL:AL049661) putative integral membrane protein from Streptomyces coelicolor (488 aa) fasta scores; opt: 220, z-score: 257.3, E(): 7.2e-07, 25.7% identity in 483 aa overlap. Contains possible membrane-spanning hydrophobic region.
  
     0.453
SCO7171
SC9A4.33c, possible lyase, len: 143 aa; similar to TR:O86701 (EMBL:AL031515) Streptomyces coelicolor putative lyase SC5C7.04, 138 aa; fasta scores: opt: 119 z-score: 158.2 E(): 0.24; 30.6% identity in 134 aa overlap.
  
     0.451
SCO7118
Hypothetical protein SC4B10.19c; SC4B10.19c, unknown, len: 254 aa.
  
     0.450
Your Current Organism:
Streptomyces coelicolor
NCBI taxonomy Id: 100226
Other names: S. coelicolor A3(2), Streptomyces coelicolor A3(2)
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