node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCO1716 | SCO3932 | gene:17759310 | gene:17761559 | SCI11.05, possible gntR-family transcriptional regulator, len: 249 aa; weakly similar to many trancriptional regulators e.g. SW:FARR_ECOLI (EMBL:X15790), FarR, Escherichia coli fatty acyl responsive regulator (240 aa), fasta scores; opt: 213 z-score: 265.9 E(): 1.8e-07, 25.0% identity in 232 aa overlap. Similar to others from S.coelicolor e.g. SCE39.14c (EMBL:AL049573) S.coelicolor possible gntR-family regulator (243 aa) (29.5% identity in 224 aa overlap). Contains probable helix-turn-helix motif at aa 42-63 (Score 1296, +3.60 SD). Contains Pfam match to entry PF00392 gntR, Bacterial r [...] | SCQ11.15c, probable gntR-family transcriptional regulator, len: 295 aa; similar to many e.g. TR:Q07191 (EMBL:Z19589), KorSA, Streptomyces ambofaciens plasmid pSAM2 transcriptional repressor (259 aa), fasta scores; opt: 292 z-score: 359.5 E(): 1.1e-12, 30.4% identity in 253 aa overlap. Also similar to CDS from other putative integrated plasmids in S.coelicolor e.g. SCE39.09c (EMBL:AL049573), korSA, regulatory protein (259 aa) (30.8% identity in 253 aa overlap). Part of a putative integrated plasmid similar to pSAM2. Contains probable helix-turn-helix motif at aa 35-56 (Score 1296, +3.60 [...] | 0.738 |
SCO1716 | SCO4628 | gene:17759310 | gene:17762274 | SCI11.05, possible gntR-family transcriptional regulator, len: 249 aa; weakly similar to many trancriptional regulators e.g. SW:FARR_ECOLI (EMBL:X15790), FarR, Escherichia coli fatty acyl responsive regulator (240 aa), fasta scores; opt: 213 z-score: 265.9 E(): 1.8e-07, 25.0% identity in 232 aa overlap. Similar to others from S.coelicolor e.g. SCE39.14c (EMBL:AL049573) S.coelicolor possible gntR-family regulator (243 aa) (29.5% identity in 224 aa overlap). Contains probable helix-turn-helix motif at aa 42-63 (Score 1296, +3.60 SD). Contains Pfam match to entry PF00392 gntR, Bacterial r [...] | Putative regulator; The imp locus inhibits the extrachromosomal maintenance of the Streptomyces plasmid SLP1. | 0.543 |
SCO1716 | SCO7351 | gene:17759310 | gene:17765011 | SCI11.05, possible gntR-family transcriptional regulator, len: 249 aa; weakly similar to many trancriptional regulators e.g. SW:FARR_ECOLI (EMBL:X15790), FarR, Escherichia coli fatty acyl responsive regulator (240 aa), fasta scores; opt: 213 z-score: 265.9 E(): 1.8e-07, 25.0% identity in 232 aa overlap. Similar to others from S.coelicolor e.g. SCE39.14c (EMBL:AL049573) S.coelicolor possible gntR-family regulator (243 aa) (29.5% identity in 224 aa overlap). Contains probable helix-turn-helix motif at aa 42-63 (Score 1296, +3.60 SD). Contains Pfam match to entry PF00392 gntR, Bacterial r [...] | SC9H11.05, possible AraC-family transcriptional regulator, len: 289 aa. Similar to several including: Streptomyces coelicolor TR:O69819(EMBL:AL023496) transcriptional regulator, SC1A6.14 (256 aa), fasta scores opt: 397 z-score: 464.2 E(): 2.2e-18 33.5% identity in 254 aa overlap and Escherichia coli SW:YEAM_ECOLI(EMBL:AE000274) hypothetical transcriptional regulator (273 aa), fasta scores opt: 438 z-score: 510.8 E(): 5.4e-21 33.2% identity in 232 aa overlap. Contains a Pfam match to entry PF00165 HTH_AraC, Bacterial regulatory helix-turn-helix proteins, araC family with the putative he [...] | 0.446 |
SCO1716 | SCO7668 | gene:17759310 | gene:17765328 | SCI11.05, possible gntR-family transcriptional regulator, len: 249 aa; weakly similar to many trancriptional regulators e.g. SW:FARR_ECOLI (EMBL:X15790), FarR, Escherichia coli fatty acyl responsive regulator (240 aa), fasta scores; opt: 213 z-score: 265.9 E(): 1.8e-07, 25.0% identity in 232 aa overlap. Similar to others from S.coelicolor e.g. SCE39.14c (EMBL:AL049573) S.coelicolor possible gntR-family regulator (243 aa) (29.5% identity in 224 aa overlap). Contains probable helix-turn-helix motif at aa 42-63 (Score 1296, +3.60 SD). Contains Pfam match to entry PF00392 gntR, Bacterial r [...] | SC4C2.03, conserved hypothetical protein, len: 159 aa; similar to TR:O06195 (EMBL:Z95387) Mycobacterium tuberculosis hypothetical 24.2 kDa protein MTCYA10.15c, 225 aa; fasta scores: opt: 235 z-score: 263.9 E(): 3.6e-07; 43.7% identity in 103 aa overlap. | 0.449 |
SCO3932 | SCO1716 | gene:17761559 | gene:17759310 | SCQ11.15c, probable gntR-family transcriptional regulator, len: 295 aa; similar to many e.g. TR:Q07191 (EMBL:Z19589), KorSA, Streptomyces ambofaciens plasmid pSAM2 transcriptional repressor (259 aa), fasta scores; opt: 292 z-score: 359.5 E(): 1.1e-12, 30.4% identity in 253 aa overlap. Also similar to CDS from other putative integrated plasmids in S.coelicolor e.g. SCE39.09c (EMBL:AL049573), korSA, regulatory protein (259 aa) (30.8% identity in 253 aa overlap). Part of a putative integrated plasmid similar to pSAM2. Contains probable helix-turn-helix motif at aa 35-56 (Score 1296, +3.60 [...] | SCI11.05, possible gntR-family transcriptional regulator, len: 249 aa; weakly similar to many trancriptional regulators e.g. SW:FARR_ECOLI (EMBL:X15790), FarR, Escherichia coli fatty acyl responsive regulator (240 aa), fasta scores; opt: 213 z-score: 265.9 E(): 1.8e-07, 25.0% identity in 232 aa overlap. Similar to others from S.coelicolor e.g. SCE39.14c (EMBL:AL049573) S.coelicolor possible gntR-family regulator (243 aa) (29.5% identity in 224 aa overlap). Contains probable helix-turn-helix motif at aa 42-63 (Score 1296, +3.60 SD). Contains Pfam match to entry PF00392 gntR, Bacterial r [...] | 0.738 |
SCO3932 | SCO4628 | gene:17761559 | gene:17762274 | SCQ11.15c, probable gntR-family transcriptional regulator, len: 295 aa; similar to many e.g. TR:Q07191 (EMBL:Z19589), KorSA, Streptomyces ambofaciens plasmid pSAM2 transcriptional repressor (259 aa), fasta scores; opt: 292 z-score: 359.5 E(): 1.1e-12, 30.4% identity in 253 aa overlap. Also similar to CDS from other putative integrated plasmids in S.coelicolor e.g. SCE39.09c (EMBL:AL049573), korSA, regulatory protein (259 aa) (30.8% identity in 253 aa overlap). Part of a putative integrated plasmid similar to pSAM2. Contains probable helix-turn-helix motif at aa 35-56 (Score 1296, +3.60 [...] | Putative regulator; The imp locus inhibits the extrachromosomal maintenance of the Streptomyces plasmid SLP1. | 0.631 |
SCO3932 | SCO5231 | gene:17761559 | gene:17762882 | SCQ11.15c, probable gntR-family transcriptional regulator, len: 295 aa; similar to many e.g. TR:Q07191 (EMBL:Z19589), KorSA, Streptomyces ambofaciens plasmid pSAM2 transcriptional repressor (259 aa), fasta scores; opt: 292 z-score: 359.5 E(): 1.1e-12, 30.4% identity in 253 aa overlap. Also similar to CDS from other putative integrated plasmids in S.coelicolor e.g. SCE39.09c (EMBL:AL049573), korSA, regulatory protein (259 aa) (30.8% identity in 253 aa overlap). Part of a putative integrated plasmid similar to pSAM2. Contains probable helix-turn-helix motif at aa 35-56 (Score 1296, +3.60 [...] | Putative gntR-family transcriptional regulator; Global regulator that is part of the nutrient-sensing system. In the absence of glucosamine 6-P (GlcN6P), represses the phosphotransferase system (PTS) specific for the uptake of N- acetylglucosamine (PTSNag), and genes involved in the metabolism of chitin, as well as several genes involved in development, thereby linking carbon availability to morphogenesis. Also regulates the expression of the ABC transporters DasABC and NgcEFG, which are involved in N,N'-diacetylchitobiose ((GlcNAc)2) uptake. Binds to the DNA consensus sequence 5'-ACTG [...] | 0.733 |
SCO3932 | SCO7351 | gene:17761559 | gene:17765011 | SCQ11.15c, probable gntR-family transcriptional regulator, len: 295 aa; similar to many e.g. TR:Q07191 (EMBL:Z19589), KorSA, Streptomyces ambofaciens plasmid pSAM2 transcriptional repressor (259 aa), fasta scores; opt: 292 z-score: 359.5 E(): 1.1e-12, 30.4% identity in 253 aa overlap. Also similar to CDS from other putative integrated plasmids in S.coelicolor e.g. SCE39.09c (EMBL:AL049573), korSA, regulatory protein (259 aa) (30.8% identity in 253 aa overlap). Part of a putative integrated plasmid similar to pSAM2. Contains probable helix-turn-helix motif at aa 35-56 (Score 1296, +3.60 [...] | SC9H11.05, possible AraC-family transcriptional regulator, len: 289 aa. Similar to several including: Streptomyces coelicolor TR:O69819(EMBL:AL023496) transcriptional regulator, SC1A6.14 (256 aa), fasta scores opt: 397 z-score: 464.2 E(): 2.2e-18 33.5% identity in 254 aa overlap and Escherichia coli SW:YEAM_ECOLI(EMBL:AE000274) hypothetical transcriptional regulator (273 aa), fasta scores opt: 438 z-score: 510.8 E(): 5.4e-21 33.2% identity in 232 aa overlap. Contains a Pfam match to entry PF00165 HTH_AraC, Bacterial regulatory helix-turn-helix proteins, araC family with the putative he [...] | 0.510 |
SCO3932 | SCO7668 | gene:17761559 | gene:17765328 | SCQ11.15c, probable gntR-family transcriptional regulator, len: 295 aa; similar to many e.g. TR:Q07191 (EMBL:Z19589), KorSA, Streptomyces ambofaciens plasmid pSAM2 transcriptional repressor (259 aa), fasta scores; opt: 292 z-score: 359.5 E(): 1.1e-12, 30.4% identity in 253 aa overlap. Also similar to CDS from other putative integrated plasmids in S.coelicolor e.g. SCE39.09c (EMBL:AL049573), korSA, regulatory protein (259 aa) (30.8% identity in 253 aa overlap). Part of a putative integrated plasmid similar to pSAM2. Contains probable helix-turn-helix motif at aa 35-56 (Score 1296, +3.60 [...] | SC4C2.03, conserved hypothetical protein, len: 159 aa; similar to TR:O06195 (EMBL:Z95387) Mycobacterium tuberculosis hypothetical 24.2 kDa protein MTCYA10.15c, 225 aa; fasta scores: opt: 235 z-score: 263.9 E(): 3.6e-07; 43.7% identity in 103 aa overlap. | 0.449 |
SCO4616 | SCO4620 | gene:17762262 | gene:17762266 | Excisionase; SCD39.16c, xis, excisionase, len: 61 aa; identical to previously sequenced TR:Q53965 (EMBL:X71358) Streptomyces coelicolor Xis, plasmid SLP1 DNA for xis and int genes, 61 aa. | SCD39.20c, traB1, possible sporulation-related protein, len: 681 aa; highly similar to TR:Q54679 (EMBL:U23762) Streptomyces phaeochromogenes essential for intermycelial plasmid transfer and pock formation, TraB, 678 aa; fasta scores: opt: 1845 z-score: 2002.9 E(): 0; 51.0% identity in 679 aa overlap and middle domain similar to middle domain of SW:SP3E_BACSU (EMBL:M17445) Bacillus subtilis stage III sporulation protein E, SpoIIIE, 787 aa; fasta scores: opt: 208 z-score: 224.4 E(): 4.9e-05; 26.7% identity in 344 aa overlap. Contains Pfam match to entry PF01580 FtsK_SpoIIIE, FtsK/SpoIIIE [...] | 0.870 |
SCO4616 | SCO4621 | gene:17762262 | gene:17762267 | Excisionase; SCD39.16c, xis, excisionase, len: 61 aa; identical to previously sequenced TR:Q53965 (EMBL:X71358) Streptomyces coelicolor Xis, plasmid SLP1 DNA for xis and int genes, 61 aa. | SCD39.21c, traA1, possible sporulation-related protein, len: 179 aa; highly similar to TR:Q54678 (EMBL:U23762) Streptomyces phaeochromogenes involved in intermycelial plasmid transfer TraA, 184 aa; fasta scores: opt: 472 z-score: 523.1 E(): 1.1e-21; 50.0% identity in 172 aa overlap. | 0.793 |
SCO4616 | SCO4628 | gene:17762262 | gene:17762274 | Excisionase; SCD39.16c, xis, excisionase, len: 61 aa; identical to previously sequenced TR:Q53965 (EMBL:X71358) Streptomyces coelicolor Xis, plasmid SLP1 DNA for xis and int genes, 61 aa. | Putative regulator; The imp locus inhibits the extrachromosomal maintenance of the Streptomyces plasmid SLP1. | 0.793 |
SCO4616 | SCO4629 | gene:17762262 | gene:17762275 | Excisionase; SCD39.16c, xis, excisionase, len: 61 aa; identical to previously sequenced TR:Q53965 (EMBL:X71358) Streptomyces coelicolor Xis, plasmid SLP1 DNA for xis and int genes, 61 aa. | Conserved hypothetical protein; The imp locus inhibits the extrachromosomal maintenance of the streptomyces plasmid SLP1. May function as a transcriptional activator. | 0.793 |
SCO4620 | SCO4616 | gene:17762266 | gene:17762262 | SCD39.20c, traB1, possible sporulation-related protein, len: 681 aa; highly similar to TR:Q54679 (EMBL:U23762) Streptomyces phaeochromogenes essential for intermycelial plasmid transfer and pock formation, TraB, 678 aa; fasta scores: opt: 1845 z-score: 2002.9 E(): 0; 51.0% identity in 679 aa overlap and middle domain similar to middle domain of SW:SP3E_BACSU (EMBL:M17445) Bacillus subtilis stage III sporulation protein E, SpoIIIE, 787 aa; fasta scores: opt: 208 z-score: 224.4 E(): 4.9e-05; 26.7% identity in 344 aa overlap. Contains Pfam match to entry PF01580 FtsK_SpoIIIE, FtsK/SpoIIIE [...] | Excisionase; SCD39.16c, xis, excisionase, len: 61 aa; identical to previously sequenced TR:Q53965 (EMBL:X71358) Streptomyces coelicolor Xis, plasmid SLP1 DNA for xis and int genes, 61 aa. | 0.870 |
SCO4620 | SCO4621 | gene:17762266 | gene:17762267 | SCD39.20c, traB1, possible sporulation-related protein, len: 681 aa; highly similar to TR:Q54679 (EMBL:U23762) Streptomyces phaeochromogenes essential for intermycelial plasmid transfer and pock formation, TraB, 678 aa; fasta scores: opt: 1845 z-score: 2002.9 E(): 0; 51.0% identity in 679 aa overlap and middle domain similar to middle domain of SW:SP3E_BACSU (EMBL:M17445) Bacillus subtilis stage III sporulation protein E, SpoIIIE, 787 aa; fasta scores: opt: 208 z-score: 224.4 E(): 4.9e-05; 26.7% identity in 344 aa overlap. Contains Pfam match to entry PF01580 FtsK_SpoIIIE, FtsK/SpoIIIE [...] | SCD39.21c, traA1, possible sporulation-related protein, len: 179 aa; highly similar to TR:Q54678 (EMBL:U23762) Streptomyces phaeochromogenes involved in intermycelial plasmid transfer TraA, 184 aa; fasta scores: opt: 472 z-score: 523.1 E(): 1.1e-21; 50.0% identity in 172 aa overlap. | 0.983 |
SCO4620 | SCO4628 | gene:17762266 | gene:17762274 | SCD39.20c, traB1, possible sporulation-related protein, len: 681 aa; highly similar to TR:Q54679 (EMBL:U23762) Streptomyces phaeochromogenes essential for intermycelial plasmid transfer and pock formation, TraB, 678 aa; fasta scores: opt: 1845 z-score: 2002.9 E(): 0; 51.0% identity in 679 aa overlap and middle domain similar to middle domain of SW:SP3E_BACSU (EMBL:M17445) Bacillus subtilis stage III sporulation protein E, SpoIIIE, 787 aa; fasta scores: opt: 208 z-score: 224.4 E(): 4.9e-05; 26.7% identity in 344 aa overlap. Contains Pfam match to entry PF01580 FtsK_SpoIIIE, FtsK/SpoIIIE [...] | Putative regulator; The imp locus inhibits the extrachromosomal maintenance of the Streptomyces plasmid SLP1. | 0.880 |
SCO4620 | SCO4629 | gene:17762266 | gene:17762275 | SCD39.20c, traB1, possible sporulation-related protein, len: 681 aa; highly similar to TR:Q54679 (EMBL:U23762) Streptomyces phaeochromogenes essential for intermycelial plasmid transfer and pock formation, TraB, 678 aa; fasta scores: opt: 1845 z-score: 2002.9 E(): 0; 51.0% identity in 679 aa overlap and middle domain similar to middle domain of SW:SP3E_BACSU (EMBL:M17445) Bacillus subtilis stage III sporulation protein E, SpoIIIE, 787 aa; fasta scores: opt: 208 z-score: 224.4 E(): 4.9e-05; 26.7% identity in 344 aa overlap. Contains Pfam match to entry PF01580 FtsK_SpoIIIE, FtsK/SpoIIIE [...] | Conserved hypothetical protein; The imp locus inhibits the extrachromosomal maintenance of the streptomyces plasmid SLP1. May function as a transcriptional activator. | 0.880 |
SCO4621 | SCO4616 | gene:17762267 | gene:17762262 | SCD39.21c, traA1, possible sporulation-related protein, len: 179 aa; highly similar to TR:Q54678 (EMBL:U23762) Streptomyces phaeochromogenes involved in intermycelial plasmid transfer TraA, 184 aa; fasta scores: opt: 472 z-score: 523.1 E(): 1.1e-21; 50.0% identity in 172 aa overlap. | Excisionase; SCD39.16c, xis, excisionase, len: 61 aa; identical to previously sequenced TR:Q53965 (EMBL:X71358) Streptomyces coelicolor Xis, plasmid SLP1 DNA for xis and int genes, 61 aa. | 0.793 |
SCO4621 | SCO4620 | gene:17762267 | gene:17762266 | SCD39.21c, traA1, possible sporulation-related protein, len: 179 aa; highly similar to TR:Q54678 (EMBL:U23762) Streptomyces phaeochromogenes involved in intermycelial plasmid transfer TraA, 184 aa; fasta scores: opt: 472 z-score: 523.1 E(): 1.1e-21; 50.0% identity in 172 aa overlap. | SCD39.20c, traB1, possible sporulation-related protein, len: 681 aa; highly similar to TR:Q54679 (EMBL:U23762) Streptomyces phaeochromogenes essential for intermycelial plasmid transfer and pock formation, TraB, 678 aa; fasta scores: opt: 1845 z-score: 2002.9 E(): 0; 51.0% identity in 679 aa overlap and middle domain similar to middle domain of SW:SP3E_BACSU (EMBL:M17445) Bacillus subtilis stage III sporulation protein E, SpoIIIE, 787 aa; fasta scores: opt: 208 z-score: 224.4 E(): 4.9e-05; 26.7% identity in 344 aa overlap. Contains Pfam match to entry PF01580 FtsK_SpoIIIE, FtsK/SpoIIIE [...] | 0.983 |
SCO4621 | SCO4628 | gene:17762267 | gene:17762274 | SCD39.21c, traA1, possible sporulation-related protein, len: 179 aa; highly similar to TR:Q54678 (EMBL:U23762) Streptomyces phaeochromogenes involved in intermycelial plasmid transfer TraA, 184 aa; fasta scores: opt: 472 z-score: 523.1 E(): 1.1e-21; 50.0% identity in 172 aa overlap. | Putative regulator; The imp locus inhibits the extrachromosomal maintenance of the Streptomyces plasmid SLP1. | 0.880 |