Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCO4954 | SCO4955 | gene:17762603 | gene:17762604 | Hypothetical protein 2SCK31.14c; 2SCK31.14c, unknown, len: 197 aa. | Putative ATP/GTP-binding protein; 2SCK31.15c, hypothetical protein, len: 395 aa; similar to TR:Q9X8V7 (EMBL:AL078610) Streptomyces coelicolor hypothetical 43.9 kDa protein SCH35.49c, 410 aa; fasta scores: opt: 1788 z-score: 1973.1 E(): 0; 63.8% identity in 398 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). | 0.494 |
SCO4954 | SCO4956 | gene:17762603 | gene:17762605 | Hypothetical protein 2SCK31.14c; 2SCK31.14c, unknown, len: 197 aa. | Putative peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.419 |
SCO4955 | SCO4954 | gene:17762604 | gene:17762603 | Putative ATP/GTP-binding protein; 2SCK31.15c, hypothetical protein, len: 395 aa; similar to TR:Q9X8V7 (EMBL:AL078610) Streptomyces coelicolor hypothetical 43.9 kDa protein SCH35.49c, 410 aa; fasta scores: opt: 1788 z-score: 1973.1 E(): 0; 63.8% identity in 398 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). | Hypothetical protein 2SCK31.14c; 2SCK31.14c, unknown, len: 197 aa. | 0.494 |
SCO4955 | SCO4956 | gene:17762604 | gene:17762605 | Putative ATP/GTP-binding protein; 2SCK31.15c, hypothetical protein, len: 395 aa; similar to TR:Q9X8V7 (EMBL:AL078610) Streptomyces coelicolor hypothetical 43.9 kDa protein SCH35.49c, 410 aa; fasta scores: opt: 1788 z-score: 1973.1 E(): 0; 63.8% identity in 398 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). | Putative peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.522 |
SCO4955 | SCO7637 | gene:17762604 | gene:17765297 | Putative ATP/GTP-binding protein; 2SCK31.15c, hypothetical protein, len: 395 aa; similar to TR:Q9X8V7 (EMBL:AL078610) Streptomyces coelicolor hypothetical 43.9 kDa protein SCH35.49c, 410 aa; fasta scores: opt: 1788 z-score: 1973.1 E(): 0; 63.8% identity in 398 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). | SC10F4.10c, secreted endoglucanase, len: 486 aa; highly similar to SW:GUNA_STRLI (EMBL:M82807) Streptomyces lividans endoglucanase CelA precursor (EC 3.2.1.4) CelA, 459 aa; fasta scores: opt: 2977 z-score: 3136.1 E(): 0; 97.4% identity in 461 aa overlap. Contains Pfam matches to entries PF00553 CBD_2, Cellulose binding domain and PF00150 cellulase, Cellulase (glycosyl hydrolase family 5) and matches to Prosite entries PS00561 Cellulose-binding domain, bacterial type and PS00659 Glycosyl hydrolases family 5 signature. Also contains possible N-terminal region signal peptide sequence. | 0.689 |
SCO4956 | SCO4954 | gene:17762605 | gene:17762603 | Putative peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Hypothetical protein 2SCK31.14c; 2SCK31.14c, unknown, len: 197 aa. | 0.419 |
SCO4956 | SCO4955 | gene:17762605 | gene:17762604 | Putative peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Putative ATP/GTP-binding protein; 2SCK31.15c, hypothetical protein, len: 395 aa; similar to TR:Q9X8V7 (EMBL:AL078610) Streptomyces coelicolor hypothetical 43.9 kDa protein SCH35.49c, 410 aa; fasta scores: opt: 1788 z-score: 1973.1 E(): 0; 63.8% identity in 398 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). | 0.522 |
SCO7637 | SCO4955 | gene:17765297 | gene:17762604 | SC10F4.10c, secreted endoglucanase, len: 486 aa; highly similar to SW:GUNA_STRLI (EMBL:M82807) Streptomyces lividans endoglucanase CelA precursor (EC 3.2.1.4) CelA, 459 aa; fasta scores: opt: 2977 z-score: 3136.1 E(): 0; 97.4% identity in 461 aa overlap. Contains Pfam matches to entries PF00553 CBD_2, Cellulose binding domain and PF00150 cellulase, Cellulase (glycosyl hydrolase family 5) and matches to Prosite entries PS00561 Cellulose-binding domain, bacterial type and PS00659 Glycosyl hydrolases family 5 signature. Also contains possible N-terminal region signal peptide sequence. | Putative ATP/GTP-binding protein; 2SCK31.15c, hypothetical protein, len: 395 aa; similar to TR:Q9X8V7 (EMBL:AL078610) Streptomyces coelicolor hypothetical 43.9 kDa protein SCH35.49c, 410 aa; fasta scores: opt: 1788 z-score: 1973.1 E(): 0; 63.8% identity in 398 aa overlap. Contains match to Prosite entry PS00017 ATP/GTP-binding site motif A (P-loop). | 0.689 |