STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEA80938.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
AEA80939.1
Signal recognition particle, subunit Ffh SRP54.
       0.572
rpsP
SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.
       0.557
trmD
tRNA (Guanine37-N1) -methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.557
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.536
AEA80936.1
Signal recognition particle receptor protein FtsY (alpha subunit).
       0.491
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.491
Your Current Organism:
Pelagibacter sp. IMCC9063
NCBI taxonomy Id: 1002672
Other names: C. Pelagibacter sp. IMCC9063, Candidatus Pelagibacter sp. IMCC9063, marine bacterium IMCC9063
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.