STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF13295.1GAF domain-containing protein. (950 aa)    
Predicted Functional Partners:
SFF13190.1
Response regulator receiver domain-containing protein.
 0.999
SFE74532.1
PAS domain S-box-containing protein.
 0.998
SFE75076.1
PAS domain S-box-containing protein.
 
0.998
SFF32514.1
PAS domain S-box-containing protein.
 
0.998
SFF51417.1
Two component regulator propeller.
0.996
SFF51248.1
Chemotaxis protein CheY-P-specific phosphatase CheC.
  
 0.989
SFF37882.1
Two component regulator propeller.
 
0.986
SFF63239.1
Response regulator receiver domain-containing protein.
 
 0.986
SFF43432.1
PAS domain S-box-containing protein.
 
 0.984
SFE96632.1
Signal transduction histidine kinase.
 
0.983
Your Current Organism:
Thermoflexibacter ruber
NCBI taxonomy Id: 1003
Other names: ATCC 23103, DSM 9560, Flexibacter ruber, IFO 16677, LMG 13857, LMG:13857, NBRC 16677, T. ruber, strain GEY
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.