STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpBClpB protein; Belongs to the ClpA/ClpB family. (899 aa)    
Predicted Functional Partners:
impC
Hypothetical protein.
 
 
 0.962
impH
Protein of unknown function (DUF1305) superfamily.
 
  
 0.951
CFU_0070
Protein ImpG/VasA.
 
  
 0.944
CFU_0071
Protein of unknown function DUF1316.
 
  
 0.944
impB
Hypothetical protein.
 
  
 0.926
CFU_0072
Putative cytoplasmic protein USSDB7A.
 
  
 0.916
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.883
CFU_0079
Rhs element Vgr protein.
 
  
 0.870
CFU_0078
Putative transmembrane protein.
 
  
 0.863
CFU_0077
Hypothetical protein.
 
  
 0.849
Your Current Organism:
Collimonas fungivorans
NCBI taxonomy Id: 1005048
Other names: C. fungivorans Ter331, Collimonas fungivorans Ter331, Collimonas fungivorans str. Ter331, Collimonas fungivorans strain Ter331, beta proteobacterium Ter331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.