STRINGSTRING
UMN179_00003 protein (Gallibacterium anatis) - STRING interaction network
"UMN179_00003" - Putative integrase in Gallibacterium anatis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMN179_00003Putative integrase (240 aa)    
Predicted Functional Partners:
UMN179_00004
Putative transposase (104 aa)
 
   
  0.898
UMN179_00005
Hypothetical protein (110 aa)
              0.634
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP (519 aa)
       
    0.538
UMN179_00006
Hypothetical protein (465 aa)
              0.512
UMN179_01053
Transposase (101 aa)
   
  0.477
UMN179_00014
Putative transposase (101 aa)
   
  0.477
UMN179_00816
Putative transposase (101 aa)
   
  0.475
UMN179_01379
Transposase (124 aa)
   
  0.472
UMN179_00153
Putative transposase (124 aa)
   
  0.472
UMN179_00835
2-octaprenyl-6-methoxyphenyl hydroxylase (395 aa)
       
    0.464
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
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