STRINGSTRING
UMN179_00600 protein (Gallibacterium anatis) - STRING interaction network
"UMN179_00600" - Hypothetical protein in Gallibacterium anatis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMN179_00600Hypothetical protein (469 aa)    
Predicted Functional Partners:
UMN179_00599
Serine dehydratase subunit alpha (437 aa)
              0.775
UMN179_00755
Hypothetical protein (161 aa)
   
          0.637
UMN179_00268
Hypothetical protein (297 aa)
   
          0.581
UMN179_02006
Potassium efflux protein KefA (1111 aa)
   
          0.553
UMN179_00498
Putative periplasmic/secreted protein (240 aa)
   
          0.542
UMN179_00120
Twin argninine leader binding protein DmsD (184 aa)
   
          0.541
UMN179_01938
Nucleoid-associated protein NdpA (337 aa)
   
          0.487
UMN179_01849
Hypothetical protein (230 aa)
   
          0.482
UMN179_01942
Cell division protein FtsN (270 aa)
   
          0.481
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription (99 aa)
   
          0.474
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
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