STRINGSTRING
UMN179_00680 protein (Gallibacterium anatis) - STRING interaction network
"UMN179_00680" - 16S ribosomal RNA methyltransferase RsmE in Gallibacterium anatis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMN179_0068016S ribosomal RNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (210 aa)    
Predicted Functional Partners:
UMN179_00681
Putative transcriptional regulator (186 aa)
   
 
  0.866
UMN179_00682
Holliday junction resolvase-like protein; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (139 aa)
   
   
  0.853
rsmI
Putative methyltransferase; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (284 aa)
 
   
  0.584
prmA
50S ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11 (293 aa)
 
   
  0.562
UMN179_01231
DNA protecting protein DprA (398 aa)
 
        0.519
ybeY
Putative metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (158 aa)
   
        0.476
argA
N-acetylglutamate synthase (442 aa)
              0.469
UMN179_00677
PhoH-like protein (367 aa)
              0.466
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) (255 aa)
              0.436
UMN179_00476
UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase (488 aa)
 
        0.432
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
Server load: low (11%) [HD]