STRINGSTRING
UMN179_00870 protein (Gallibacterium anatis) - STRING interaction network
"UMN179_00870" - VacJ like lipoprotein in Gallibacterium anatis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMN179_00870VacJ like lipoprotein (243 aa)    
Predicted Functional Partners:
UMN179_01442
Hypothetical protein (169 aa)
 
     
  0.845
UMN179_01441
Toluene tolerance protein (214 aa)
 
   
  0.837
UMN179_00869
YfbU domain-containing protein (164 aa)
              0.606
UMN179_02049
Peptidoglycan-associated outer membrane lipoprotein (150 aa)
   
 
 
  0.587
UMN179_01443
Hypothetical protein (261 aa)
 
     
  0.573
UMN179_02046
Colicin uptake protein TolR (140 aa)
   
          0.553
UMN179_00871
Lipoprotein (222 aa)
              0.494
UMN179_02045
Colicin uptake protein TolQ (229 aa)
   
          0.472
UMN179_00872
Putative lipoprotein (111 aa)
              0.467
UMN179_02225
Outer membrane-specific lipoprotein transporter subunit LolE (416 aa)
   
 
      0.408
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
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