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trmA protein (Gallibacterium anatis) - STRING interaction network
"trmA" - Hypothetical protein in Gallibacterium anatis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
trmAHypothetical protein; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA) (365 aa)    
Predicted Functional Partners:
rsmJ
Putative methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA (254 aa)
   
        0.865
UMN179_01219
16S rRNA methyltransferase B (440 aa)
     
  0.785
UMN179_00675
Putative P-loop ATPase fused to an acetyltransferase (650 aa)
     
        0.659
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (307 aa)
     
   
  0.642
UMN179_01436
Putative methyltransferase (357 aa)
   
 
  0.628
rlmB
23S rRNA; Specifically methylates the ribose of guanosine 2251 in 23S rRNA (245 aa)
   
 
  0.628
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (265 aa)
   
   
  0.616
UMN179_00519
Cysteine synthase A (316 aa)
   
      0.615
UMN179_01184
Hypothetical protein; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle (197 aa)
   
 
    0.562
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (282 aa)
     
 
  0.537
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
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