STRINGSTRING
UMN179_01938 protein (Gallibacterium anatis) - STRING interaction network
"UMN179_01938" - Nucleoid-associated protein NdpA in Gallibacterium anatis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMN179_01938Nucleoid-associated protein NdpA (337 aa)    
Predicted Functional Partners:
UMN179_01936
Arylsulfatase (593 aa)
 
     
  0.763
rraB
Hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome (132 aa)
   
          0.758
UMN179_01937
Hypothetical protein (61 aa)
              0.701
UMN179_02475
Hypothetical protein (147 aa)
   
          0.662
bamE
SmpA/OmlA family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (139 aa)
              0.655
proQ
Putative solute/DNA competence effector protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities (218 aa)
   
        0.639
UMN179_02464
Universal stress protein UspE (313 aa)
   
          0.634
UMN179_01661
Hypothetical protein (83 aa)
   
          0.633
UMN179_00883
Hypothetical protein (196 aa)
   
          0.627
UMN179_00180
Bifunctional chorismate mutase/prephenate dehydrogenase (375 aa)
   
          0.591
Your Current Organism:
Gallibacterium anatis
NCBI taxonomy Id: 1005058
Other names: G. anatis, G. anatis UMN179, Gallibacterium, Gallibacterium Christensen et al. 2003 emend. Bisgaard et al. 2009, Gallibacterium anatis, Gallibacterium anatis UMN179, Gallibacterium anatis str. UMN179, Gallibacterium anatis strain UMN179, Pasteurella anatis, Salpingitia sp. 10672/6, Salpingitia sp. 10672/9, Salpingitia sp. 12158, Salpingitia sp. 20558, Salpingitia sp. 36961/sv7, Salpingitia sp. BJ3453, Salpingitia sp. BK3387.2, Salpingitia sp. CCM 5995, Salpingitia sp. Gerl.220, Salpingitia sp. Gerl.3348/80, Salpingitia sp. Gerl.4224, Salpingitia sp. IPDH 697/78, avian Pasteurella haemolytica complex
Server load: low (7%) [HD]